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Author Carles Sanchez; Debora Gil; Antoni Rosell; Albert Andaluz; F. Javier Sanchez
Title Segmentation of Tracheal Rings in Videobronchoscopy combining Geometry and Appearance Type Conference Article
Year 2013 Publication Proceedings of the International Conference on Computer Vision Theory and Applications Abbreviated Journal
Volume 1 Issue Pages 153--161
Keywords (down) Video-bronchoscopy, tracheal ring segmentation, trachea geometric and appearance model
Abstract Videobronchoscopy is a medical imaging technique that allows interactive navigation inside the respiratory pathways and minimal invasive interventions. Tracheal procedures are ordinary interventions that require measurement of the percentage of obstructed pathway for injury (stenosis) assessment. Visual assessment of stenosis in videobronchoscopic sequences requires high expertise of trachea anatomy and is prone to human error. Accurate detection of tracheal rings is the basis for automated estimation of the size of stenosed trachea. Processing of videobronchoscopic images acquired at the operating room is a challenging task due to the wide range of artifacts and acquisition conditions. We present a model of the geometric-appearance of tracheal rings for its detection in videobronchoscopic videos. Experiments on sequences acquired at the operating room, show a performance close to inter-observer variability
Address Barcelona; February 2013
Corporate Author Thesis
Publisher SciTePress Place of Publication Portugal Editor Sebastiano Battiato and José Braz
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title LNCS
Series Volume Series Issue Edition
ISSN ISBN 978-989-8565-47-1 Medium
Area 800 Expedition Conference VISAPP
Notes IAM;MV; 600.044; 600.047; 600.060; 605.203 Approved no
Call Number IAM @ iam @ SGR2013 Serial 2123
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Author Fernando Vilariño; Ludmila I. Kuncheva; Petia Radeva
Title ROC curves and video analysis optimization in intestinal capsule endoscopy Type Journal Article
Year 2006 Publication Pattern Recognition Letters Abbreviated Journal PRL
Volume 27 Issue 8 Pages 875–881
Keywords (down) ROC curves; Classification; Classifiers ensemble; Detection of intestinal contractions; Imbalanced classes; Wireless capsule endoscopy
Abstract Wireless capsule endoscopy involves inspection of hours of video material by a highly qualified professional. Time episodes corresponding to intestinal contractions, which are of interest to the physician constitute about 1% of the video. The problem is to label automatically time episodes containing contractions so that only a fraction of the video needs inspection. As the classes of contraction and non-contraction images in the video are largely imbalanced, ROC curves are used to optimize the trade-off between false positive and false negative rates. Classifier ensemble methods and simple classifiers were examined. Our results reinforce the claims from recent literature that classifier ensemble methods specifically designed for imbalanced problems have substantial advantages over simple classifiers and standard classifier ensembles. By using ROC curves with the bagging ensemble method the inspection time can be drastically reduced at the expense of a small fraction of missed contractions.
Address
Corporate Author Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area 800 Expedition Conference
Notes MILAB;MV;SIAI Approved no
Call Number BCNPCL @ bcnpcl @ VKR2006; IAM @ iam @ VKR2006 Serial 647
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Author Joan M. Nuñez; Debora Gil; Fernando Vilariño
Title Finger joint characterization from X-ray images for rheymatoid arthritis assessment Type Conference Article
Year 2013 Publication 6th International Conference on Biomedical Electronics and Devices Abbreviated Journal
Volume Issue Pages 288-292
Keywords (down) Rheumatoid Arthritis; X-Ray; Hand Joint; Sclerosis; Sharp Van der Heijde
Abstract In this study we propose amodular systemfor automatic rheumatoid arthritis assessment which provides a joint space width measure. A hand joint model is proposed based on the accurate analysis of a X-ray finger joint image sample set. This model shows that the sclerosis and the lower bone are the main necessary features in order to perform a proper finger joint characterization. We propose sclerosis and lower bone detection methods as well as the experimental setup necessary for its performance assessment. Our characterization is used to propose and compute a joint space width score which is shown to be related to the different degrees of arthritis. This assertion is verified by comparing our proposed score with Sharp Van der Heijde score, confirming that the lower our score is the more advanced is the patient affection.
Address Barcelona; February 2013
Corporate Author Thesis
Publisher SciTePress Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area 800 Expedition Conference BIODEVICES
Notes IAM;MV; 600.057; 600.054;SIAI Approved no
Call Number IAM @ iam @ NGV2013 Serial 2196
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Author Jorge Bernal
Title Use of Projection and Back-projection Methods in Bidimensional Computed Tomography Image Reconstruction Type Report
Year 2009 Publication CVC Tecnical Report Abbreviated Journal
Volume 141 Issue Pages
Keywords (down) Projection, Back-projection, CT scan, Euclidean geometry, Radon transform
Abstract One of the biggest drawbacks related to the use of CT scanners is the cost (in memory and in time) associated. In this project many methods to simulate their functioning, but in a more feasible way (taking an industrial point of view), will be studied.
The main group of techniques that are being used are the one entitled as ’back-projection’. The concept behind is to simulate the X ray emission in CT scans by lines that cross with the image we want to reconstruct.
In the first part of this document euclidean geometry is used to face the tasks of projec- tion and back-projection. After analysing the results achieved it has been proved that this approach does not lead to a fully perfect reconstruction (and also has some other problems related to running time and memory cost). Because of this in the second part of the document ’Filtered Back-projection’ method is introduced in order to improve the results.
Filtered Back-projection methods rely on mathematical transforms (Fourier, Radon) in order to provide more accurate results that can be obtained in much less time. The main cause of this better results is the use of a filtering process before the back-projection in order to avoid high frequency-caused errors.
As a result of this project two different implementations (one for each approach) had been implemented in order to compare their performance.
Address
Corporate Author Computer Vision Center Thesis Master's thesis
Publisher Place of Publication Barcelona, Spain Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area 800 Expedition Conference
Notes MV; Approved no
Call Number IAM @ iam @ Ber2009 Serial 1693
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Author Jorge Bernal; F. Javier Sanchez; Fernando Vilariño
Title Depth of Valleys Accumulation Algorithm for Object Detection Type Conference Article
Year 2011 Publication 14th Congrès Català en Intel·ligencia Artificial Abbreviated Journal
Volume 1 Issue 1 Pages 71-80
Keywords (down) Object Recognition, Object Region Identification, Image Analysis, Image Processing
Abstract This work aims at detecting in which regions the objects in the image are by using information about the intensity of valleys, which appear to surround ob- jects in images where the source of light is in the line of direction than the camera. We present our depth of valleys accumulation method, which consists of two stages: first, the definition of the depth of valleys image which combines the output of a ridges and valleys detector with the morphological gradient to measure how deep is a point inside a valley and second, an algorithm that denotes points of the image as interior to objects those which are inside complete or incomplete boundaries in the depth of valleys image. To evaluate the performance of our method we have tested it on several application domains. Our results on object region identification are promising, specially in the field of polyp detection in colonoscopy videos, and we also show its applicability in different areas.
Address Lleida
Corporate Author Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN 978-1-60750-841-0 Medium
Area 800 Expedition Conference CCIA
Notes MV;SIAI Approved no
Call Number IAM @ iam @ BSV2011b Serial 1699
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Author Jorge Bernal; F. Javier Sanchez; Fernando Vilariño
Title Current Challenges on Polyp Detection in Colonoscopy Videos: From Region Segmentation to Region Classification. a Pattern Recognition-based Approach.ased Approach Type Conference Article
Year 2011 Publication 2nd International Workshop on Medical Image Analysis and Descriptionfor Diagnosis Systems Abbreviated Journal
Volume Issue Pages 62-71
Keywords (down) Medical Imaging, Colonoscopy, Pattern Recognition, Segmentation, Polyp Detection, Region Description, Machine Learning, Real-time.
Abstract In this paper we present our approach on real-time polyp detection in colonoscopy videos. Our method consists of three stages: Image Segmentation, Region Description and Image Classification. Taking into account the constraints of our project, we introduce our segmentation system that is based on the model of appearance of the polyp that we have defined after observing real videos from colonoscopy processes. The output of this stage will ideally be a low number of regions of which one of them should cover the whole polyp region (if there is one in the image). This regions will be described in terms of features and, as a result of a machine learning schema, classified based on the values that they have for the several features that we will use on their description. Although we are still on the early stages of the project, we present some preliminary segmentation results that indicates that we are going in a good direction.
Address Rome, Italy
Corporate Author Thesis
Publisher SciTePress Place of Publication Editor Djemal, Khalifa
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area 800 Expedition Conference MIAD
Notes MV;SIAI Approved no
Call Number IAM @ iam @ BSV2011a Serial 1695
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Author Carles Sanchez; Jorge Bernal; Debora Gil; F. Javier Sanchez
Title On-line lumen centre detection in gastrointestinal and respiratory endoscopy Type Conference Article
Year 2013 Publication Second International Workshop Clinical Image-Based Procedures Abbreviated Journal
Volume 8361 Issue Pages 31-38
Keywords (down) Lumen centre detection; Bronchoscopy; Colonoscopy
Abstract We present in this paper a novel lumen centre detection for gastrointestinal and respiratory endoscopic images. The proposed method is based on the appearance and geometry of the lumen, which we defined as the darkest image region which centre is a hub of image gradients. Experimental results validated on the first public annotated gastro-respiratory database prove the reliability of the method for a wide range of images (with precision over 95 %).
Address Nagoya; Japan; September 2013
Corporate Author Thesis
Publisher Springer International Publishing Place of Publication Editor Erdt, Marius and Linguraru, Marius George and Oyarzun Laura, Cristina and Shekhar, Raj and Wesarg, Stefan and González Ballester, Miguel Angel and Drechsler, Klaus
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title LNCS
Series Volume Series Issue Edition
ISSN ISBN 978-3-319-05665-4 Medium
Area 800 Expedition Conference CLIP
Notes MV; IAM; 600.047; 600.044; 600.060 Approved no
Call Number Admin @ si @ SBG2013 Serial 2302
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Author Fernando Vilariño; Panagiota Spyridonos; Jordi Vitria; Fernando Azpiroz; Petia Radeva
Title Cascade analysis for intestinal contraction detection Type Conference Article
Year 2006 Publication 20th International Congress and exhibition Computer Assisted Radiology and Surgery Abbreviated Journal
Volume Issue Pages 9-10
Keywords (down) intestine video analysis, anisotropic features, support vector machine, cascade of classifiers
Abstract In this work, we address the study of intestinal contractions in a novel approach based on a machine learning framework to process data from Wireless Capsule Video Endoscopy. Wireless endoscopy represents a unique way to visualize the intestine motility by creating long videos to visualize intestine dynamics. In this paper we argue that to analyze huge amount of wireless endoscopy data and define robust methods for contraction detection we should base our approach on sophisticated machine learning techniques. In particular, we propose a cascade of classifiers in order to remove different physiological phenomenon and obtain the motility pattern of small intestines. Our results show obtaining high specificity and sensitivity rates that highlight the high efficiency of the selected approach and support the feasibility of the proposed methodology in the automatic detection and analysis of intestine contractions.
Address Osaka (Japan)
Corporate Author Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area 800 Expedition Conference CARS
Notes MV;OR;MILAB;SIAI Approved no
Call Number BCNPCL @ bcnpcl @ VSV2006a; IAM @ iam @ VSV2006h Serial 726
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Author Farhan Riaz; Fernando Vilariño; Mario Dinis-Ribeiro; Miguel Coimbraln
Title Identifying Potentially Cancerous Tissues in Chromoendoscopy Images Type Conference Article
Year 2011 Publication 5th Iberian Conference on Pattern Recognition and Image Analysis Abbreviated Journal
Volume 6669 Issue Pages 709-716
Keywords (down) Endoscopy, Computer Assisted Diagnosis, Gradient.
Abstract The dynamics of image acquisition conditions for gastroenterology imaging scenarios pose novel challenges for automatic computer assisted decision systems. Such systems should have the ability to mimic the tissue characterization of the physicians. In this paper, our objective is to compare some feature extraction methods to classify a Chromoendoscopy image into two different classes: Normal and Potentially cancerous. Results show that LoG filters generally give best classification accuracy among the other feature extraction methods considered.
Address Las Palmas de Gran Canaria. Spain
Corporate Author Thesis
Publisher Springer Place of Publication Berlin Editor J. Vitria, J.M. Sanches, and M. Hernandez
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title LNCS
Series Volume Series Issue Edition
ISSN ISBN 978-3-642-21256-7 Medium
Area 800 Expedition Conference IbPRIA
Notes MV;SIAI Approved no
Call Number Admin @ si @ RVD2011; IAM @ iam @ RVD2011 Serial 1726
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Author Joan M. Nuñez; Jorge Bernal; F. Javier Sanchez; Fernando Vilariño
Title Blood Vessel Characterization in Colonoscopy Images to Improve Polyp Localization Type Conference Article
Year 2013 Publication Proceedings of the International Conference on Computer Vision Theory and Applications Abbreviated Journal
Volume 1 Issue Pages 162-171
Keywords (down) Colonoscopy; Blood vessel; Linear features; Valley detection
Abstract This paper presents an approach to mitigate the contribution of blood vessels to the energy image used at different tasks of automatic colonoscopy image analysis. This goal is achieved by introducing a characterization of endoluminal scene objects which allows us to differentiate between the trace of 2-dimensional visual objects,such as vessels, and shades from 3-dimensional visual objects, such as folds. The proposed characterization is based on the influence that the object shape has in the resulting visual feature, and it leads to the development of a blood vessel attenuation algorithm. A database consisting of manually labelled masks was built in order to test the performance of our method, which shows an encouraging success in blood vessel mitigation while keeping other structures intact. Moreover, by extending our method to the only available polyp localization
algorithm tested on a public database, blood vessel mitigation proved to have a positive influence on the overall performance.
Address Barcelona; February 2013
Corporate Author Thesis
Publisher SciTePress Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area 800 Expedition Conference VISIGRAPP
Notes MV; 600.054; 600.057;SIAI Approved no
Call Number IAM @ iam @ NBS2013 Serial 2198
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Author Jorge Bernal; F. Javier Sanchez; Fernando Vilariño
Title Towards Automatic Polyp Detection with a Polyp Appearance Model Type Journal Article
Year 2012 Publication Pattern Recognition Abbreviated Journal PR
Volume 45 Issue 9 Pages 3166-3182
Keywords (down) Colonoscopy,PolypDetection,RegionSegmentation,SA-DOVA descriptot
Abstract This work aims at the automatic polyp detection by using a model of polyp appearance in the context of the analysis of colonoscopy videos. Our method consists of three stages: region segmentation, region description and region classification. The performance of our region segmentation method guarantees that if a polyp is present in the image, it will be exclusively and totally contained in a single region. The output of the algorithm also defines which regions can be considered as non-informative. We define as our region descriptor the novel Sector Accumulation-Depth of Valleys Accumulation (SA-DOVA), which provides a necessary but not sufficient condition for the polyp presence. Finally, we classify our segmented regions according to the maximal values of the SA-DOVA descriptor. Our preliminary classification results are promising, especially when classifying those parts of the image that do not contain a polyp inside.
Address
Corporate Author Thesis
Publisher Elsevier Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 0031-3203 ISBN Medium
Area 800 Expedition Conference IbPRIA
Notes MV;SIAI Approved no
Call Number Admin @ si @ BSV2012; IAM @ iam Serial 1997
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Author Jorge Bernal; F. Javier Sanchez; Fernando Vilariño
Title A Region Segmentation Method for Colonoscopy Images Using a Model of Polyp Appearance Type Conference Article
Year 2011 Publication 5th Iberian Conference on Pattern Recognition and Image Analysis Abbreviated Journal
Volume 6669 Issue Pages 134-143   
Keywords (down) Colonoscopy, Polyp Detection, Region Merging, Region Segmentation.
Abstract This work aims at the segmentation of colonoscopy images into a minimum number of informative regions. Our method performs in a way such, if a polyp is present in the image, it will be exclusively and totally contained in a single region. This result can be used in later stages to classify regions as polyp-containing candidates. The output of the algorithm also defines which regions can be considered as non-informative. The algorithm starts with a high number of initial regions and merges them taking into account the model of polyp appearance obtained from available data. The results show that our segmentations of polyp regions are more accurate than state-of-the-art methods.
Address Las Palmas de Gran Canaria, June 2011
Corporate Author SpringerLink Thesis
Publisher Place of Publication Editor Vitrià, Jordi and Sanches, João and Hernández, Mario
Language Summary Language Original Title
Series Editor Series Title Lecture Notes in Computer Science Abbreviated Series Title LNCS
Series Volume Series Issue Edition
ISSN ISBN 978-3-642-21256-7 Medium
Area 800 Expedition Conference IbPRIA
Notes MV;SIAI Approved no
Call Number IAM @ iam @ BSV2011c Serial 1696
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Author Fernando Vilariño; Panagiota Spyridonos; Jordi Vitria; Fernando Azpiroz; Petia Radeva
Title Automatic Detection of Intestinal Juices in Wireless Capsule Video Endoscopy Type Conference Article
Year 2006 Publication 18th International Conference on Pattern Recognition Abbreviated Journal
Volume 4 Issue Pages 719-722
Keywords (down) Clinical diagnosis , Endoscopes , Fluids and secretions , Gabor filters , Hospitals , Image sequence analysis , Intestines , Lighting , Shape , Visualization
Abstract Wireless capsule video endoscopy is a novel and challenging clinical technique, whose major reported drawback relates to the high amount of time needed for video visualization. In this paper, we propose a method for the rejection of the parts of the video resulting not valid for analysis by means of automatic detection of intestinal juices. We applied Gabor filters for the characterization of the bubble-like shape of intestinal juices in fasting patients. Our method achieves a significant reduction in visualization time, with no relevant loss of valid frames. The proposed approach is easily extensible to other image analysis scenarios where the described pattern of bubbles can be found.
Address Hong Kong
Corporate Author Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 1051-4651 ISBN 0-7695-2521-0 Medium
Area 800 Expedition Conference ICPR
Notes MV;OR;MILAB;SIAI Approved no
Call Number BCNPCL @ bcnpcl @ VSV2006b; IAM @ iam @ VSV2006g Serial 727
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Author Carles Sanchez;F. Javier Sanchez; Antoni Rosell; Debora Gil
Title An illumination model of the trachea appearance in videobronchoscopy images Type Book Chapter
Year 2012 Publication Image Analysis and Recognition Abbreviated Journal LNCS
Volume 7325 Issue Pages 313-320
Keywords (down) Bronchoscopy, tracheal ring, stenosis assesment, trachea appearance model, segmentation
Abstract Videobronchoscopy is a medical imaging technique that allows interactive navigation inside the respiratory pathways. This imaging modality provides realistic images and allows non-invasive minimal intervention procedures. Tracheal procedures are routinary interventions that require assessment of the percentage of obstructed pathway for injury (stenosis) detection. Visual assessment in videobronchoscopic sequences requires high expertise of trachea anatomy and is prone to human error.
This paper introduces an automatic method for the estimation of steneosed trachea percentage reduction in videobronchoscopic images. We look for tracheal rings , whose deformation determines the degree of obstruction. For ring extraction , we present a ring detector based on an illumination and appearance model. This model allows us to parametrise the ring detection. Finally, we can infer optimal estimation parameters for any video resolution.
Address Aveiro, Portugal
Corporate Author Thesis
Publisher Springer Berlin Heidelberg Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Lecture Notes in Computer Science Abbreviated Series Title LNCS
Series Volume Series Issue Edition
ISSN 0302-9743 ISBN 978-3-642-31297-7 Medium
Area 800 Expedition Conference ICIAR
Notes MV;IAM Approved no
Call Number IAM @ iam @ SSR2012 Serial 1898
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Author Panagiota Spyridonos; Fernando Vilariño; Jordi Vitria; Fernando Azpiroz; Petia Radeva
Title Anisotropic Feature Extraction from Endoluminal Images for Detection of Intestinal Contractions Type Book Chapter
Year 2006 Publication 9th International Conference on Medical Image Computing and Computer–Assisted Intervention Abbreviated Journal
Volume 4191 Issue Pages 161–168
Keywords (down)
Abstract Wireless endoscopy is a very recent and at the same time unique technique allowing to visualize and study the occurrence of con- tractions and to analyze the intestine motility. Feature extraction is es- sential for getting efficient patterns to detect contractions in wireless video endoscopy of small intestine. We propose a novel method based on anisotropic image filtering and efficient statistical classification of con- traction features. In particular, we apply the image gradient tensor for mining informative skeletons from the original image and a sequence of descriptors for capturing the characteristic pattern of contractions. Fea- tures extracted from the endoluminal images were evaluated in terms of their discriminatory ability in correct classifying images as either belong- ing to contractions or not. Classification was performed by means of a support vector machine classifier with a radial basis function kernel. Our classification rates gave sensitivity of the order of 90.84% and specificity of the order of 94.43% respectively. These preliminary results highlight the high efficiency of the selected descriptors and support the feasibility of the proposed method in assisting the automatic detection and analysis of contractions.
Address Copenhagen (Denmark)
Corporate Author Thesis
Publisher Springer Verlag Place of Publication Berlin Heidelberg Editor R. Larsen, M. Nielsen, and J. Sporring
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title LNCS
Series Volume Series Issue Edition
ISSN ISBN Medium
Area 800 Expedition Conference MICCAI06
Notes MV;OR;MILAB;SIAI Approved no
Call Number BCNPCL @ bcnpcl @ SVV2006; IAM @ iam @ SVV2006 Serial 725
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