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| Author | Francesco Ciompi; Simone Balocco; Juan Rigla; Xavier Carrillo; J. Mauri; Petia Radeva | ||||
| Title | Computer-Aided Detection of Intra-Coronary Stent in Intravascular Ultrasound Sequences | Type | Journal Article | ||
| Year | 2016 | Publication | Medical Physics | Abbreviated Journal | MP |
| Volume | 43 | Issue | 10 | Pages | |
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| Abstract | Purpose: An intraluminal coronary stent is a metal mesh tube deployed in a stenotic artery during Percutaneous Coronary Intervention (PCI), in order to prevent acute vessel occlusion. The identi cation of struts location and the de nition of the stent shape are relevant for PCI planning 15 and for patient follow-up. We present a fully-automatic framework for Computer-Aided Detection
(CAD) of intra-coronary stents in Intravascular Ultrasound (IVUS) image sequences. The CAD system is able to detect stent struts and estimate the stent shape. Methods: The proposed CAD uses machine learning to provide a comprehensive interpretation of the local structure of the vessel by means of semantic classi cation. The output of the classi cation 20 stage is then used to detect struts and to estimate the stent shape. The proposed approach is validated using a multi-centric data-set of 1,015 images from 107 IVUS sequences containing both metallic and bio-absorbable stents. Results: The method was able to detect structs in both metallic stents with an overall F-measure of 77.7% and a mean distance of 0.15 mm from manually annotated struts, and in bio-absorbable 25 stents with an overall F-measure of 77.4% and a mean distance of 0.09 mm from manually annotated struts. Conclusions: The results are close to the inter-observer variability and suggest that the system has the potential of being used as method for aiding percutaneous interventions. |
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| Notes | MILAB | Approved | no | ||
| Call Number | Admin @ si @ CBR2016 | Serial | 2819 | ||
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| Author | Jean-Pascal Jacob; Mariella Dimiccoli; L. Moisan | ||||
| Title | Active skeleton for bacteria modelling | Type | Journal Article | ||
| Year | 2017 | Publication | Computer Methods in Biomechanics and Biomedical Engineering: Imaging and Visualization | Abbreviated Journal | CMBBE |
| Volume | 5 | Issue | 4 | Pages | 274-286 |
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| Abstract | The investigation of spatio-temporal dynamics of bacterial cells and their molecular components requires automated image analysis tools to track cell shape properties and molecular component locations inside the cells. In the study of bacteria aging, the molecular components of interest are protein aggregates accumulated near bacteria boundaries. This particular location makes very ambiguous the correspondence between aggregates and cells, since computing accurately bacteria boundaries in phase-contrast time-lapse imaging is a challenging task. This paper proposes an active skeleton formulation for bacteria modelling which provides several advantages: an easy computation of shape properties (perimeter, length, thickness and orientation), an improved boundary accuracy in noisy images and a natural bacteria-centred coordinate system that permits the intrinsic location of molecular components inside the cell. Starting from an initial skeleton estimate, the medial axis of the bacterium is obtained by minimising an energy function which incorporates bacteria shape constraints. Experimental results on biological images and comparative evaluation of the performances validate the proposed approach for modelling cigar-shaped bacteria like Escherichia coli. The Image-J plugin of the proposed method can be found online at http://fluobactracker.inrialpes.fr. | ||||
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| Publisher | Taylor & Francis Group | Place of Publication | Editor | ||
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| Notes | MILAB; | Approved | no | ||
| Call Number | Admin @ si @JDM2017 | Serial | 2784 | ||
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| Author | A.S. Coquel; Jean-Pascal Jacob; M. Primet; A. Demarez; Mariella Dimiccoli; T. Julou; L. Moisan; A. Lindner; H. Berry | ||||
| Title | Localization of protein aggregation in Escherichia coli is governed by diffusion and nucleoid macromolecular crowding effect | Type | Journal Article | ||
| Year | 2013 | Publication | Plos Computational Biology | Abbreviated Journal | PCB |
| Volume | 9 | Issue | 4 | Pages | |
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| Abstract | Aggregates of misfolded proteins are a hallmark of many age-related diseases. Recently, they have been linked to aging of Escherichia coli (E. coli) where protein aggregates accumulate at the old pole region of the aging bacterium. Because of the potential of E. coli as a model organism, elucidating aging and protein aggregation in this bacterium may pave the way to significant advances in our global understanding of aging. A first obstacle along this path is to decipher the mechanisms by which protein aggregates are targeted to specific intercellular locations. Here, using an integrated approach based on individual-based modeling, time-lapse fluorescence microscopy and automated image analysis, we show that the movement of aging-related protein aggregates in E. coli is purely diffusive (Brownian). Using single-particle tracking of protein aggregates in live E. coli cells, we estimated the average size and diffusion constant of the aggregates. Our results provide evidence that the aggregates passively diffuse within the cell, with diffusion constants that depend on their size in agreement with the Stokes-Einstein law. However, the aggregate displacements along the cell long axis are confined to a region that roughly corresponds to the nucleoid-free space in the cell pole, thus confirming the importance of increased macromolecular crowding in the nucleoids. We thus used 3D individual-based modeling to show that these three ingredients (diffusion, aggregation and diffusion hindrance in the nucleoids) are sufficient and necessary to reproduce the available experimental data on aggregate localization in the cells. Taken together, our results strongly support the hypothesis that the localization of aging-related protein aggregates in the poles of E. coli results from the coupling of passive diffusion-aggregation with spatially non-homogeneous macromolecular crowding. They further support the importance of “soft” intracellular structuring (based on macromolecular crowding) in diffusion-based protein localization in E. coli. | ||||
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| Publisher | Place of Publication | Editor | : Stanislav Shvartsman, Princeton University, United States of America | ||
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| Notes | Approved | no | |||
| Call Number | Admin @ si @CJP2013 | Serial | 2786 | ||
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| Author | Miguel Oliveira; Victor Santos; Angel Sappa; P. Dias; A. Moreira | ||||
| Title | Incremental Scenario Representations for Autonomous Driving using Geometric Polygonal Primitives | Type | Journal Article | ||
| Year | 2016 | Publication | Robotics and Autonomous Systems | Abbreviated Journal | RAS |
| Volume | 83 | Issue | Pages | 312-325 | |
| Keywords | Incremental scene reconstruction; Point clouds; Autonomous vehicles; Polygonal primitives | ||||
| Abstract | When an autonomous vehicle is traveling through some scenario it receives a continuous stream of sensor data. This sensor data arrives in an asynchronous fashion and often contains overlapping or redundant information. Thus, it is not trivial how a representation of the environment observed by the vehicle can be created and updated over time. This paper presents a novel methodology to compute an incremental 3D representation of a scenario from 3D range measurements. We propose to use macro scale polygonal primitives to model the scenario. This means that the representation of the scene is given as a list of large scale polygons that describe the geometric structure of the environment. Furthermore, we propose mechanisms designed to update the geometric polygonal primitives over time whenever fresh sensor data is collected. Results show that the approach is capable of producing accurate descriptions of the scene, and that it is computationally very efficient when compared to other reconstruction techniques. | ||||
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| Publisher | Elsevier B.V. | Place of Publication | Editor | ||
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| Notes | ADAS; 600.086, 600.076 | Approved | no | ||
| Call Number | Admin @ si @OSS2016a | Serial | 2806 | ||
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| Author | Angel Sappa; P. Carvajal; Cristhian A. Aguilera-Carrasco; Miguel Oliveira; Dennis Romero; Boris X. Vintimilla | ||||
| Title | Wavelet based visible and infrared image fusion: a comparative study | Type | Journal Article | ||
| Year | 2016 | Publication | Sensors | Abbreviated Journal | SENS |
| Volume | 16 | Issue | 6 | Pages | 1-15 |
| Keywords | Image fusion; fusion evaluation metrics; visible and infrared imaging; discrete wavelet transform | ||||
| Abstract | This paper evaluates different wavelet-based cross-spectral image fusion strategies adopted to merge visible and infrared images. The objective is to find the best setup independently of the evaluation metric used to measure the performance. Quantitative performance results are obtained with state of the art approaches together with adaptations proposed in the current work. The options evaluated in the current work result from the combination of different setups in the wavelet image decomposition stage together with different fusion strategies for the final merging stage that generates the resulting representation. Most of the approaches evaluate results according to the application for which they are intended for. Sometimes a human observer is selected to judge the quality of the obtained results. In the current work, quantitative values are considered in order to find correlations between setups and performance of obtained results; these correlations can be used to define a criteria for selecting the best fusion strategy for a given pair of cross-spectral images. The whole procedure is evaluated with a large set of correctly registered visible and infrared image pairs, including both Near InfraRed (NIR) and Long Wave InfraRed (LWIR). | ||||
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| Notes | ADAS; 600.086; 600.076 | Approved | no | ||
| Call Number | Admin @ si @SCA2016 | Serial | 2807 | ||
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| Author | Angel Sappa; Cristhian A. Aguilera-Carrasco; Juan A. Carvajal Ayala; Miguel Oliveira; Dennis Romero; Boris X. Vintimilla; Ricardo Toledo | ||||
| Title | Monocular visual odometry: A cross-spectral image fusion based approach | Type | Journal Article | ||
| Year | 2016 | Publication | Robotics and Autonomous Systems | Abbreviated Journal | RAS |
| Volume | 85 | Issue | Pages | 26-36 | |
| Keywords | Monocular visual odometry; LWIR-RGB cross-spectral imaging; Image fusion | ||||
| Abstract | This manuscript evaluates the usage of fused cross-spectral images in a monocular visual odometry approach. Fused images are obtained through a Discrete Wavelet Transform (DWT) scheme, where the best setup is empirically obtained by means of a mutual information based evaluation metric. The objective is to have a flexible scheme where fusion parameters are adapted according to the characteristics of the given images. Visual odometry is computed from the fused monocular images using an off the shelf approach. Experimental results using data sets obtained with two different platforms are presented. Additionally, comparison with a previous approach as well as with monocular-visible/infrared spectra are also provided showing the advantages of the proposed scheme. | ||||
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| Publisher | Elsevier B.V. | Place of Publication | Editor | ||
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| Notes | ADAS;600.086; 600.076 | Approved | no | ||
| Call Number | Admin @ si @SAC2016 | Serial | 2811 | ||
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| Author | Maria Elena Meza-de-Luna; Juan Ramon Terven Salinas; Bogdan Raducanu; Joaquin Salas | ||||
| Title | Assessing the Influence of Mirroring on the Perception of Professional Competence using Wearable Technology | Type | Journal Article | ||
| Year | 2016 | Publication | IEEE Transactions on Affective Computing | Abbreviated Journal | TAC |
| Volume | 9 | Issue | 2 | Pages | 161-175 |
| Keywords | Mirroring; Nodding; Competence; Perception; Wearable Technology | ||||
| Abstract | Nonverbal communication is an intrinsic part in daily face-to-face meetings. A frequently observed behavior during social interactions is mirroring, in which one person tends to mimic the attitude of the counterpart. This paper shows that a computer vision system could be used to predict the perception of competence in dyadic interactions through the automatic detection of mirroring
events. To prove our hypothesis, we developed: (1) A social assistant for mirroring detection, using a wearable device which includes a video camera and (2) an automatic classifier for the perception of competence, using the number of nodding gestures and mirroring events as predictors. For our study, we used a mixed-method approach in an experimental design where 48 participants acting as customers interacted with a confederated psychologist. We found that the number of nods or mirroring events has a significant influence on the perception of competence. Our results suggest that: (1) Customer mirroring is a better predictor than psychologist mirroring; (2) the number of psychologist’s nods is a better predictor than the number of customer’s nods; (3) except for the psychologist mirroring, the computer vision algorithm we used worked about equally well whether it was acquiring images from wearable smartglasses or fixed cameras. |
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| Notes | LAMP; 600.072; | Approved | no | ||
| Call Number | Admin @ si @ MTR2016 | Serial | 2826 | ||
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| Author | Sumit K. Banchhor; Tadashi Araki; Narendra D. Londhe; Nobutaka Ikeda; Petia Radeva; Ayman El-Baz; Luca Saba; Andrew Nicolaides; Shoaib Shafique; John R. Laird; Jasjit S. Suri | ||||
| Title | Five multiresolution-based calcium volume measurement techniques from coronary IVUS videos: A comparative approach | Type | Journal Article | ||
| Year | 2016 | Publication | Computer Methods and Programs in Biomedicine | Abbreviated Journal | CMPB |
| Volume | 134 | Issue | Pages | 237-258 | |
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| Abstract | BACKGROUND AND OBJECTIVE:
Fast intravascular ultrasound (IVUS) video processing is required for calcium volume computation during the planning phase of percutaneous coronary interventional (PCI) procedures. Nonlinear multiresolution techniques are generally applied to improve the processing time by down-sampling the video frames. METHODS: This paper presents four different segmentation methods for calcium volume measurement, namely Threshold-based, Fuzzy c-Means (FCM), K-means, and Hidden Markov Random Field (HMRF) embedded with five different kinds of multiresolution techniques (bilinear, bicubic, wavelet, Lanczos, and Gaussian pyramid). This leads to 20 different kinds of combinations. IVUS image data sets consisting of 38,760 IVUS frames taken from 19 patients were collected using 40 MHz IVUS catheter (Atlantis® SR Pro, Boston Scientific®, pullback speed of 0.5 mm/sec.). The performance of these 20 systems is compared with and without multiresolution using the following metrics: (a) computational time; (b) calcium volume; (c) image quality degradation ratio; and (d) quality assessment ratio. RESULTS: Among the four segmentation methods embedded with five kinds of multiresolution techniques, FCM segmentation combined with wavelet-based multiresolution gave the best performance. FCM and wavelet experienced the highest percentage mean improvement in computational time of 77.15% and 74.07%, respectively. Wavelet interpolation experiences the highest mean precision-of-merit (PoM) of 94.06 ± 3.64% and 81.34 ± 16.29% as compared to other multiresolution techniques for volume level and frame level respectively. Wavelet multiresolution technique also experiences the highest Jaccard Index and Dice Similarity of 0.7 and 0.8, respectively. Multiresolution is a nonlinear operation which introduces bias and thus degrades the image. The proposed system also provides a bias correction approach to enrich the system, giving a better mean calcium volume similarity for all the multiresolution-based segmentation methods. After including the bias correction, bicubic interpolation gives the largest increase in mean calcium volume similarity of 4.13% compared to the rest of the multiresolution techniques. The system is automated and can be adapted in clinical settings. CONCLUSIONS: We demonstrated the time improvement in calcium volume computation without compromising the quality of IVUS image. Among the 20 different combinations of multiresolution with calcium volume segmentation methods, the FCM embedded with wavelet-based multiresolution gave the best performance. |
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| Notes | MILAB; | Approved | no | ||
| Call Number | Admin @ si @ BAL2016 | Serial | 2830 | ||
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| Author | Santiago Segui; Michal Drozdzal; Guillem Pascual; Petia Radeva; Carolina Malagelada; Fernando Azpiroz; Jordi Vitria | ||||
| Title | Generic Feature Learning for Wireless Capsule Endoscopy Analysis | Type | Journal Article | ||
| Year | 2016 | Publication | Computers in Biology and Medicine | Abbreviated Journal | CBM |
| Volume | 79 | Issue | Pages | 163-172 | |
| Keywords | Wireless capsule endoscopy; Deep learning; Feature learning; Motility analysis | ||||
| Abstract | The interpretation and analysis of wireless capsule endoscopy (WCE) recordings is a complex task which requires sophisticated computer aided decision (CAD) systems to help physicians with video screening and, finally, with the diagnosis. Most CAD systems used in capsule endoscopy share a common system design, but use very different image and video representations. As a result, each time a new clinical application of WCE appears, a new CAD system has to be designed from the scratch. This makes the design of new CAD systems very time consuming. Therefore, in this paper we introduce a system for small intestine motility characterization, based on Deep Convolutional Neural Networks, which circumvents the laborious step of designing specific features for individual motility events. Experimental results show the superiority of the learned features over alternative classifiers constructed using state-of-the-art handcrafted features. In particular, it reaches a mean classification accuracy of 96% for six intestinal motility events, outperforming the other classifiers by a large margin (a 14% relative performance increase). | ||||
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| Notes | OR; MILAB;MV; | Approved | no | ||
| Call Number | Admin @ si @ SDP2016 | Serial | 2836 | ||
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| Author | Xavier Perez Sala; Fernando De la Torre; Laura Igual; Sergio Escalera; Cecilio Angulo | ||||
| Title | Subspace Procrustes Analysis | Type | Journal Article | ||
| Year | 2017 | Publication | International Journal of Computer Vision | Abbreviated Journal | IJCV |
| Volume | 121 | Issue | 3 | Pages | 327–343 |
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| Abstract | Procrustes Analysis (PA) has been a popular technique to align and build 2-D statistical models of shapes. Given a set of 2-D shapes PA is applied to remove rigid transformations. Then, a non-rigid 2-D model is computed by modeling (e.g., PCA) the residual. Although PA has been widely used, it has several limitations for modeling 2-D shapes: occluded landmarks and missing data can result in local minima solutions, and there is no guarantee that the 2-D shapes provide a uniform sampling of the 3-D space of rotations for the object. To address previous issues, this paper proposes Subspace PA (SPA). Given several
instances of a 3-D object, SPA computes the mean and a 2-D subspace that can simultaneously model all rigid and non-rigid deformations of the 3-D object. We propose a discrete (DSPA) and continuous (CSPA) formulation for SPA, assuming that 3-D samples of an object are provided. DSPA extends the traditional PA, and produces unbiased 2-D models by uniformly sampling different views of the 3-D object. CSPA provides a continuous approach to uniformly sample the space of 3-D rotations, being more efficient in space and time. Experiments using SPA to learn 2-D models of bodies from motion capture data illustrate the benefits of our approach. |
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| Notes | MILAB; HuPBA; no proj | Approved | no | ||
| Call Number | Admin @ si @ PTI2017 | Serial | 2841 | ||
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| Author | Frederic Sampedro; Anna Domenech; Sergio Escalera; Ignasi Carrio | ||||
| Title | Computing quantitative indicators of structural renal damage in pediatric DMSA scans | Type | Journal Article | ||
| Year | 2017 | Publication | Revista Española de Medicina Nuclear e Imagen Molecular | Abbreviated Journal | REMNIM |
| Volume | 36 | Issue | 2 | Pages | 72-77 |
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| Abstract | OBJECTIVES:
The proposal and implementation of a computational framework for the quantification of structural renal damage from 99mTc-dimercaptosuccinic acid (DMSA) scans. The aim of this work is to propose, implement, and validate a computational framework for the quantification of structural renal damage from DMSA scans and in an observer-independent manner. MATERIALS AND METHODS: From a set of 16 pediatric DMSA-positive scans and 16 matched controls and using both expert-guided and automatic approaches, a set of image-derived quantitative indicators was computed based on the relative size, intensity and histogram distribution of the lesion. A correlation analysis was conducted in order to investigate the association of these indicators with other clinical data of interest in this scenario, including C-reactive protein (CRP), white cell count, vesicoureteral reflux, fever, relative perfusion, and the presence of renal sequelae in a 6-month follow-up DMSA scan. RESULTS: A fully automatic lesion detection and segmentation system was able to successfully classify DMSA-positive from negative scans (AUC=0.92, sensitivity=81% and specificity=94%). The image-computed relative size of the lesion correlated with the presence of fever and CRP levels (p<0.05), and a measurement derived from the distribution histogram of the lesion obtained significant performance results in the detection of permanent renal damage (AUC=0.86, sensitivity=100% and specificity=75%). CONCLUSIONS: The proposal and implementation of a computational framework for the quantification of structural renal damage from DMSA scans showed a promising potential to complement visual diagnosis and non-imaging indicators. |
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| Notes | HuPBA;MILAB; no menciona | Approved | no | ||
| Call Number | Admin @ si @ SDE2017 | Serial | 2842 | ||
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| Author | Mikkel Thogersen; Sergio Escalera; Jordi Gonzalez; Thomas B. Moeslund | ||||
| Title | Segmentation of RGB-D Indoor scenes by Stacking Random Forests and Conditional Random Fields | Type | Journal Article | ||
| Year | 2016 | Publication | Pattern Recognition Letters | Abbreviated Journal | PRL |
| Volume | 80 | Issue | Pages | 208–215 | |
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| Abstract | This paper proposes a technique for RGB-D scene segmentation using Multi-class
Multi-scale Stacked Sequential Learning (MMSSL) paradigm. Following recent trends in state-of-the-art, a base classifier uses an initial SLIC segmentation to obtain superpixels which provide a diminution of data while retaining object boundaries. A series of color and depth features are extracted from the superpixels, and are used in a Conditional Random Field (CRF) to predict superpixel labels. Furthermore, a Random Forest (RF) classifier using random offset features is also used as an input to the CRF, acting as an initial prediction. As a stacked classifier, another Random Forest is used acting on a spatial multi-scale decomposition of the CRF confidence map to correct the erroneous labels assigned by the previous classifier. The model is tested on the popular NYU-v2 dataset. The approach shows that simple multi-modal features with the power of the MMSSL paradigm can achieve better performance than state of the art results on the same dataset. |
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| Notes | HuPBA; ISE;MILAB; 600.098; 600.119 | Approved | no | ||
| Call Number | Admin @ si @ TEG2016 | Serial | 2843 | ||
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| Author | Jose Garcia-Rodriguez; Isabelle Guyon; Sergio Escalera; Alexandra Psarrou; Andrew Lewis; Miguel Cazorla | ||||
| Title | Editorial: Special Issue on Computational Intelligence for Vision and Robotics | Type | Journal Article | ||
| Year | 2017 | Publication | Neural Computing and Applications | Abbreviated Journal | Neural Computing and Applications |
| Volume | 28 | Issue | 5 | Pages | 853–854 |
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| Notes | HuPBA;MILAB; no menciona | Approved | no | ||
| Call Number | Admin @ si @ GGE2017 | Serial | 2845 | ||
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| Author | Sergio Escalera; Jordi Gonzalez; Xavier Baro; Jamie Shotton | ||||
| Title | Guest Editor Introduction to the Special Issue on Multimodal Human Pose Recovery and Behavior Analysis | Type | Journal Article | ||
| Year | 2016 | Publication | IEEE Transactions on Pattern Analysis and Machine Intelligence | Abbreviated Journal | TPAMI |
| Volume | 28 | Issue | Pages | 1489 - 1491 | |
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| Abstract | The sixteen papers in this special section focus on human pose recovery and behavior analysis (HuPBA). This is one of the most challenging topics in computer vision, pattern analysis, and machine learning. It is of critical importance for application areas that include gaming, computer interaction, human robot interaction, security, commerce, assistive technologies and rehabilitation, sports, sign language recognition, and driver assistance technology, to mention just a few. In essence, HuPBA requires dealing with the articulated nature of the human body, changes in appearance due to clothing, and the inherent problems of clutter scenes, such as background artifacts, occlusions, and illumination changes. These papers represent the most recent research in this field, including new methods considering still images, image sequences, depth data, stereo vision, 3D vision, audio, and IMUs, among others. | ||||
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| Notes | HuPBA; ISE;MV; | Approved | no | ||
| Call Number | Admin @ si @ | Serial | 2851 | ||
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| Author | Marc Oliu; Ciprian Corneanu; Kamal Nasrollahi; Olegs Nikisins; Sergio Escalera; Yunlian Sun; Haiqing Li; Zhenan Sun; Thomas B. Moeslund; Modris Greitans | ||||
| Title | Improved RGB-D-T based Face Recognition | Type | Journal Article | ||
| Year | 2016 | Publication | IET Biometrics | Abbreviated Journal | BIO |
| Volume | 5 | Issue | 4 | Pages | 297 - 303 |
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| Abstract | Reliable facial recognition systems are of crucial importance in various applications from entertainment to security. Thanks to the deep-learning concepts introduced in the field, a significant improvement in the performance of the unimodal facial recognition systems has been observed in the recent years. At the same time a multimodal facial recognition is a promising approach. This study combines the latest successes in both directions by applying deep learning convolutional neural networks (CNN) to the multimodal RGB, depth, and thermal (RGB-D-T) based facial recognition problem outperforming previously published results. Furthermore, a late fusion of the CNN-based recognition block with various hand-crafted features (local binary patterns, histograms of oriented gradients, Haar-like rectangular features, histograms of Gabor ordinal measures) is introduced, demonstrating even better recognition performance on a benchmark RGB-D-T database. The obtained results in this study show that the classical engineered features and CNN-based features can complement each other for recognition purposes. | ||||
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| Notes | HuPBA;MILAB; | Approved | no | ||
| Call Number | Admin @ si @ OCN2016 | Serial | 2854 | ||
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