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Author | Michal Drozdzal; Santiago Segui; Carolina Malagelada; Fernando Azpiroz; Petia Radeva | ||||
Title | Adaptable image cuts for motility inspection using WCE | Type | Journal Article | ||
Year | 2013 | Publication | Computerized Medical Imaging and Graphics | Abbreviated Journal | CMIG |
Volume | 37 | Issue | 1 | Pages | 72-80 |
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Abstract | The Wireless Capsule Endoscopy (WCE) technology allows the visualization of the whole small intestine tract. Since the capsule is freely moving, mainly by the means of peristalsis, the data acquired during the study gives a lot of information about the intestinal motility. However, due to: (1) huge amount of frames, (2) complex intestinal scene appearance and (3) intestinal dynamics that make difficult the visualization of the small intestine physiological phenomena, the analysis of the WCE data requires computer-aided systems to speed up the analysis. In this paper, we propose an efficient algorithm for building a novel representation of the WCE video data, optimal for motility analysis and inspection. The algorithm transforms the 3D video data into 2D longitudinal view by choosing the most informative, from the intestinal motility point of view, part of each frame. This step maximizes the lumen visibility in its longitudinal extension. The task of finding “the best longitudinal view” has been defined as a cost function optimization problem which global minimum is obtained by using Dynamic Programming. Validation on both synthetic data and WCE data shows that the adaptive longitudinal view is a good alternative to the traditional motility analysis done by video analysis. The proposed novel data representation a new, holistic insight into the small intestine motility, allowing to easily define and analyze motility events that are difficult to spot by analyzing WCE video. Moreover, the visual inspection of small intestine motility is 4 times faster then by means of video skimming of the WCE. | ||||
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Notes | MILAB; OR; 600.046; 605.203 | Approved | no | ||
Call Number | Admin @ si @ DSM2012 | Serial | 2151 | ||
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Author | Cristhian Aguilera; Fernando Barrera; Felipe Lumbreras; Angel Sappa; Ricardo Toledo | ||||
Title | Multispectral Image Feature Points | Type | Journal Article | ||
Year | 2012 | Publication | Sensors | Abbreviated Journal | SENS |
Volume | 12 | Issue | 9 | Pages | 12661-12672 |
Keywords | multispectral image descriptor; color and infrared images; feature point descriptor | ||||
Abstract | Far-Infrared and Visible Spectrum images. It allows matching interest points on images of the same scene but acquired in different spectral bands. Initially, points of interest are detected on both images through a SIFT-like based scale space representation. Then, these points are characterized using an Edge Oriented Histogram (EOH) descriptor. Finally, points of interest from multispectral images are matched by finding nearest couples using the information from the descriptor. The provided experimental results and comparisons with similar methods show both the validity of the proposed approach as well as the improvements it offers with respect to the current state-of-the-art. | ||||
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Notes | ADAS | Approved | no | ||
Call Number | Admin @ si @ ABL2012 | Serial | 2154 | ||
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Author | Joan Serrat; Felipe Lumbreras; Antonio Lopez | ||||
Title | Cost estimation of custom hoses from STL files and CAD drawings | Type | Journal Article | ||
Year | 2013 | Publication | Computers in Industry | Abbreviated Journal | COMPUTIND |
Volume | 64 | Issue | 3 | Pages | 299-309 |
Keywords | On-line quotation; STL format; Regression; Gaussian process | ||||
Abstract | We present a method for the cost estimation of custom hoses from CAD models. They can come in two formats, which are easy to generate: a STL file or the image of a CAD drawing showing several orthogonal projections. The challenges in either cases are, first, to obtain from them a high level 3D description of the shape, and second, to learn a regression function for the prediction of the manufacturing time, based on geometric features of the reconstructed shape. The chosen description is the 3D line along the medial axis of the tube and the diameter of the circular sections along it. In order to extract it from STL files, we have adapted RANSAC, a robust parametric fitting algorithm. As for CAD drawing images, we propose a new technique for 3D reconstruction from data entered on any number of orthogonal projections. The regression function is a Gaussian process, which does not constrain the function to adopt any specific form and is governed by just two parameters. We assess the accuracy of the manufacturing time estimation by k-fold cross validation on 171 STL file models for which the time is provided by an expert. The results show the feasibility of the method, whereby the relative error for 80% of the testing samples is below 15%. | ||||
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Publisher | Elsevier | Place of Publication | Editor | ||
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Notes | ADAS; 600.057; 600.054; 605.203 | Approved | no | ||
Call Number | Admin @ si @ SLL2013; ADAS @ adas @ | Serial | 2161 | ||
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Author | Simone Balocco; Carlo Gatta; Marina Alberti; Xavier Carrillo; Juan Rigla; Petia Radeva | ||||
Title | Relation between plaque type, plaque thickness, blood shear stress and plaque stress in coronary arteries assessed by X-ray Angiography and Intravascular Ultrasound | Type | Journal Article | ||
Year | 2012 | Publication | Medical Physics | Abbreviated Journal | MEDPHYS |
Volume | 39 | Issue | 12 | Pages | 7430-7445 |
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Abstract | PMID 23231293
PURPOSE: Atheromatic plaque progression is affected, among others phenomena, by biomechanical, biochemical, and physiological factors. In this paper, the authors introduce a novel framework able to provide both morphological (vessel radius, plaque thickness, and type) and biomechanical (wall shear stress and Von Mises stress) indices of coronary arteries. METHODS: First, the approach reconstructs the three-dimensional morphology of the vessel from intravascular ultrasound (IVUS) and Angiographic sequences, requiring minimal user interaction. Then, a computational pipeline allows to automatically assess fluid-dynamic and mechanical indices. Ten coronary arteries are analyzed illustrating the capabilities of the tool and confirming previous technical and clinical observations. RESULTS: The relations between the arterial indices obtained by IVUS measurement and simulations have been quantitatively analyzed along the whole surface of the artery, extending the analysis of the coronary arteries shown in previous state of the art studies. Additionally, for the first time in the literature, the framework allows the computation of the membrane stresses using a simplified mechanical model of the arterial wall. CONCLUSIONS: Circumferentially (within a given frame), statistical analysis shows an inverse relation between the wall shear stress and the plaque thickness. At the global level (comparing a frame within the entire vessel), it is observed that heavy plaque accumulations are in general calcified and are located in the areas of the vessel having high wall shear stress. Finally, in their experiments the inverse proportionality between fluid and structural stresses is observed. |
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Notes | MILAB | Approved | no | ||
Call Number | Admin @ si @BGA2012 | Serial | 2170 | ||
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Author | Cesar Isaza; Joaquin Salas; Bogdan Raducanu | ||||
Title | Evaluation of Intrinsic Image Algorithms to Detect the Shadows Cast by Static Objects Outdoors | Type | Journal Article | ||
Year | 2012 | Publication | Sensors | Abbreviated Journal | SENS |
Volume | 12 | Issue | 10 | Pages | 13333-13348 |
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Abstract | In some automatic scene analysis applications, the presence of shadows becomes a nuisance that is necessary to deal with. As a consequence, a preliminary stage in many computer vision algorithms is to attenuate their effect. In this paper, we focus our attention on the detection of shadows cast by static objects outdoors, as the scene is viewed for extended periods of time (days, weeks) from a fixed camera and considering daylight intervals where the main source of light is the sun. In this context, we report two contributions. First, we introduce the use of synthetic images for which ground truth can be generated automatically, avoiding the tedious effort of manual annotation. Secondly, we report a novel application of the intrinsic image concept to the automatic detection of shadows cast by static objects in outdoors. We make both a quantitative and a qualitative evaluation of several algorithms based on this image representation. For the quantitative evaluation, we used the synthetic data set, while for the qualitative evaluation we used both data sets. Our experimental results show that the evaluated methods can partially solve the problem of shadow detection. | ||||
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Notes | OR;MV | Approved | no | ||
Call Number | Admin @ si @ ISR2012b | Serial | 2173 | ||
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Author | Fadi Dornaika; Abdelmalik Moujahid; Bogdan Raducanu | ||||
Title | Facial expression recognition using tracked facial actions: Classifier performance analysis | Type | Journal Article | ||
Year | 2013 | Publication | Engineering Applications of Artificial Intelligence | Abbreviated Journal | EAAI |
Volume | 26 | Issue | 1 | Pages | 467-477 |
Keywords | Visual face tracking; 3D deformable models; Facial actions; Dynamic facial expression recognition; Human–computer interaction | ||||
Abstract | In this paper, we address the analysis and recognition of facial expressions in continuous videos. More precisely, we study classifiers performance that exploit head pose independent temporal facial action parameters. These are provided by an appearance-based 3D face tracker that simultaneously provides the 3D head pose and facial actions. The use of such tracker makes the recognition pose- and texture-independent. Two different schemes are studied. The first scheme adopts a dynamic time warping technique for recognizing expressions where training data are given by temporal signatures associated with different universal facial expressions. The second scheme models temporal signatures associated with facial actions with fixed length feature vectors (observations), and uses some machine learning algorithms in order to recognize the displayed expression. Experiments quantified the performance of different schemes. These were carried out on CMU video sequences and home-made video sequences. The results show that the use of dimension reduction techniques on the extracted time series can improve the classification performance. Moreover, these experiments show that the best recognition rate can be above 90%. | ||||
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Publisher | Elsevier | Place of Publication | Editor | ||
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Notes | OR; 600.046;MV | Approved | no | ||
Call Number | Admin @ si @ DMR2013 | Serial | 2185 | ||
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Author | David Roche; Debora Gil; Jesus Giraldo | ||||
Title | Multiple active receptor conformation, agonist efficacy and maximum effect of the system: the conformation-based operational model of agonism, | Type | Journal Article | ||
Year | 2013 | Publication | Drug Discovery Today | Abbreviated Journal | DDT |
Volume | 18 | Issue | 7-8 | Pages | 365-371 |
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Abstract | The operational model of agonism assumes that the maximum effect a particular receptor system can achieve (the Em parameter) is fixed. Em estimates are above but close to the asymptotic maximum effects of endogenous agonists. The concept of Em is contradicted by superagonists and those positive allosteric modulators that significantly increase the maximum effect of endogenous agonists. An extension of the operational model is proposed that assumes that the Em parameter does not necessarily have a single value for a receptor system but has multiple values associated to multiple active receptor conformations. The model provides a mechanistic link between active receptor conformation and agonist efficacy, which can be useful for the analysis of agonist response under different receptor scenarios. | ||||
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Publisher | Elsevier | Place of Publication | Editor | ||
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Notes | IAM; 600.057; 600.054 | Approved | no | ||
Call Number | IAM @ iam @ RGG2013a | Serial | 2190 | ||
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Author | Ferran Poveda; Debora Gil; Enric Marti; Albert Andaluz; Manel Ballester;Francesc Carreras Costa | ||||
Title | Helical structure of the cardiac ventricular anatomy assessed by Diffusion Tensor Magnetic Resonance Imaging multi-resolution tractography | Type | Journal Article | ||
Year | 2013 | Publication | Revista Española de Cardiología | Abbreviated Journal | REC |
Volume | 66 | Issue | 10 | Pages | 782-790 |
Keywords | Heart;Diffusion magnetic resonance imaging;Diffusion tractography;Helical heart;Myocardial ventricular band. | ||||
Abstract | Deep understanding of myocardial structure linking morphology and function of the heart would unravel crucial knowledge for medical and surgical clinical procedures and studies. Several conceptual models of myocardial fiber organization have been proposed but the lack of an automatic and objective methodology prevented an agreement. We sought to deepen in this knowledge through advanced computer graphic representations of the myocardial fiber architecture by diffusion tensor magnetic resonance imaging (DT-MRI).
We performed automatic tractography reconstruction of unsegmented DT-MRI canine heart datasets coming from the public database of the Johns Hopkins University. Full scale tractographies have been build with 200 seeds and are composed by streamlines computed on the vectorial field of primary eigenvectors given at the diffusion tensor volumes. Also, we introduced a novel multi-scale visualization technique in order to obtain a simplified tractography. This methodology allowed to keep the main geometric features of the fiber tracts, making easier to decipher the main properties of the architectural organization of the heart. On the analysis of the output from our tractographic representations we found exact correlation with low-level details of myocardial architecture, but also with the more abstract conceptualization of a continuous helical ventricular myocardial fiber array. Objective analysis of myocardial architecture by an automated method, including the entire myocardium and using several 3D levels of complexity, reveals a continuous helical myocardial fiber arrangement of both right and left ventricles, supporting the anatomical model of the helical ventricular myocardial band described by Torrent-Guasp. |
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Publisher | Elsevier | Place of Publication | Editor | ||
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Notes | IAM; 600.044; 600.060 | Approved | no | ||
Call Number | IAM @ iam @ PGM2013 | Serial | 2194 | ||
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Author | David Roche; Debora Gil; Jesus Giraldo | ||||
Title | Mechanistic analysis of the function of agonists and allosteric modulators: Reconciling two-state and operational models | Type | Journal Article | ||
Year | 2013 | Publication | British Journal of Pharmacology | Abbreviated Journal | BJP |
Volume | 169 | Issue | 6 | Pages | 1189-202 |
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Abstract | Two-state and operational models of both agonism and allosterism are compared to identify and characterize common pharmacological parameters. To account for the receptor-dependent basal response, constitutive receptor activity is considered in the operational models. By arranging two-state models as the fraction of active receptors and operational models as the fractional response relative to the maximum effect of the system, a one-by-one correspondence between parameters is found. The comparative analysis allows a better understanding of complex allosteric interactions. In particular, the inclusion of constitutive receptor activity in the operational model of allosterism allows the characterization of modulators able to lower the basal response of the system; that is, allosteric modulators with negative intrinsic efficacy. Theoretical simulations and overall goodness of fit of the models to simulated data suggest that it is feasible to apply the models to experimental data and constitute one step forward in receptor theory formalism. | ||||
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Notes | IAM; 600.044; 605.203 | Approved | no | ||
Call Number | IAM @ iam @ RGG2013b | Serial | 2195 | ||
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Author | T.Chauhan; E.Perales; Kaida Xiao; E.Hird ; Dimosthenis Karatzas; Sophie Wuerger | ||||
Title | The achromatic locus: Effect of navigation direction in color space | Type | Journal Article | ||
Year | 2014 | Publication | Journal of Vision | Abbreviated Journal | VSS |
Volume | 14 (1) | Issue | 25 | Pages | 1-11 |
Keywords | achromatic; unique hues; color constancy; luminance; color space | ||||
Abstract | 5Y Impact Factor: 2.99 / 1st (Ophthalmology)
An achromatic stimulus is defined as a patch of light that is devoid of any hue. This is usually achieved by asking observers to adjust the stimulus such that it looks neither red nor green and at the same time neither yellow nor blue. Despite the theoretical and practical importance of the achromatic locus, little is known about the variability in these settings. The main purpose of the current study was to evaluate whether achromatic settings were dependent on the task of the observers, namely the navigation direction in color space. Observers could either adjust the test patch along the two chromatic axes in the CIE u*v* diagram or, alternatively, navigate along the unique-hue lines. Our main result is that the navigation method affects the reliability of these achromatic settings. Observers are able to make more reliable achromatic settings when adjusting the test patch along the directions defined by the four unique hues as opposed to navigating along the main axes in the commonly used CIE u*v* chromaticity plane. This result holds across different ambient viewing conditions (Dark, Daylight, Cool White Fluorescent) and different test luminance levels (5, 20, and 50 cd/m2). The reduced variability in the achromatic settings is consistent with the idea that internal color representations are more aligned with the unique-hue lines than the u* and v* axes. |
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Notes | DAG; 600.077 | Approved | no | ||
Call Number | Admin @ si @ CPX2014 | Serial | 2418 | ||
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Author | Fernando Vilariño; Stephan Ameling; Gerard Lacey; Stephen Patchett; Hugh Mulcahy | ||||
Title | Eye Tracking Search Patterns in Expert and Trainee Colonoscopists: A Novel Method of Assessing Endoscopic Competency? | Type | Journal Article | ||
Year | 2009 | Publication | Gastrointestinal Endoscopy | Abbreviated Journal | GI |
Volume | 69 | Issue | 5 | Pages | 370 |
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Area | 800 | Expedition | Conference | ||
Notes | MV;SIAI | Approved | no | ||
Call Number | fernando @ fernando @ | Serial | 2420 | ||
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Author | Rozenn Dhayot; Fernando Vilariño; Gerard Lacey | ||||
Title | Improving the Quality of Color Colonoscopy Videos | Type | Journal Article | ||
Year | 2008 | Publication | EURASIP Journal on Image and Video Processing | Abbreviated Journal | EURASIP JIVP |
Volume | 139429 | Issue | 1 | Pages | 1-9 |
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Area | 800 | Expedition | Conference | ||
Notes | MV;SIAI | Approved | no | ||
Call Number | fernando @ fernando @ | Serial | 2422 | ||
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Author | Mirko Arnold; Anarta Ghosh; Stephen Ameling; G Lacey | ||||
Title | Automatic segmentation and inpainting of specular highlights for endoscopic imaging | Type | Journal Article | ||
Year | 2010 | Publication | EURASIP Journal on Image and Video Processing | Abbreviated Journal | EURASIP JIVP |
Volume | 2010 | Issue | 9 | Pages | |
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Area | 800 | Expedition | Conference | ||
Notes | MV | Approved | no | ||
Call Number | fernando @ fernando @ | Serial | 2423 | ||
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Author | Onur Ferhat; Fernando Vilariño; F. Javier Sanchez | ||||
Title | A cheap portable eye-tracker solution for common setups. | Type | Journal Article | ||
Year | 2014 | Publication | Journal of Eye Movement Research | Abbreviated Journal | JEMR |
Volume | 7 | Issue | 3 | Pages | 1-10 |
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Abstract | We analyze the feasibility of a cheap eye-tracker where the hardware consists of a single webcam and a Raspberry Pi device. Our aim is to discover the limits of such a system and to see whether it provides an acceptable performance. We base our work on the open source Opengazer (Zielinski, 2013) and we propose several improvements to create a robust, real-time system which can work on a computer with 30Hz sampling rate. After assessing the accuracy of our eye-tracker in elaborated experiments involving 12 subjects under 4 different system setups, we install it on a Raspberry Pi to create a portable stand-alone eye-tracker which achieves 1.42° horizontal accuracy with 3Hz refresh rate for a building cost of 70 Euros. | ||||
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Notes | ;SIAI | Approved | no | ||
Call Number | Admin @ si @ FVS2014 | Serial | 2435 | ||
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Author | Xavier Perez Sala; Sergio Escalera; Cecilio Angulo; Jordi Gonzalez | ||||
Title | A survey on model based approaches for 2D and 3D visual human pose recovery | Type | Journal Article | ||
Year | 2014 | Publication | Sensors | Abbreviated Journal | SENS |
Volume | 14 | Issue | 3 | Pages | 4189-4210 |
Keywords | human pose recovery; human body modelling; behavior analysis; computer vision | ||||
Abstract | Human Pose Recovery has been studied in the field of Computer Vision for the last 40 years. Several approaches have been reported, and significant improvements have been obtained in both data representation and model design. However, the problem of Human Pose Recovery in uncontrolled environments is far from being solved. In this paper, we define a general taxonomy to group model based approaches for Human Pose Recovery, which is composed of five main modules: appearance, viewpoint, spatial relations, temporal consistence, and behavior. Subsequently, a methodological comparison is performed following the proposed taxonomy, evaluating current SoA approaches in the aforementioned five group categories. As a result of this comparison, we discuss the main advantages and drawbacks of the reviewed literature. | ||||
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Notes | HuPBA; ISE; 600.046; 600.063; 600.078;MILAB | Approved | no | ||
Call Number | Admin @ si @ PEA2014 | Serial | 2443 | ||
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