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Author Jorge Bernal; F. Javier Sanchez; Fernando Vilariño
Title Impact of Image Preprocessing Methods on Polyp Localization in Colonoscopy Frames Type Conference Article
Year 2013 Publication 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society Abbreviated Journal
Volume Issue Pages 7350 - 7354
Keywords
Abstract In this paper we present our image preprocessing methods as a key part of our automatic polyp localization scheme. These methods are used to assess the impact of different endoluminal scene elements when characterizing polyps. More precisely we tackle the influence of specular highlights, blood vessels and black mask surrounding the scene. Experimental results prove that the appropriate handling of these elements leads to a great improvement in polyp localization results.
Address Osaka; Japan; July 2013
Corporate Author Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN (down) 1557-170X ISBN Medium
Area 800 Expedition Conference EMBC
Notes MV; 600.047; 600.060;SIAI Approved no
Call Number Admin @ si @ BSV2013 Serial 2286
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Author Santiago Segui; Michal Drozdzal; Fernando Vilariño; Carolina Malagelada; Fernando Azpiroz; Petia Radeva; Jordi Vitria
Title Categorization and Segmentation of Intestinal Content Frames for Wireless Capsule Endoscopy Type Journal Article
Year 2012 Publication IEEE Transactions on Information Technology in Biomedicine Abbreviated Journal TITB
Volume 16 Issue 6 Pages 1341-1352
Keywords
Abstract Wireless capsule endoscopy (WCE) is a device that allows the direct visualization of gastrointestinal tract with minimal discomfort for the patient, but at the price of a large amount of time for screening. In order to reduce this time, several works have proposed to automatically remove all the frames showing intestinal content. These methods label frames as {intestinal content – clear} without discriminating between types of content (with different physiological meaning) or the portion of image covered. In addition, since the presence of intestinal content has been identified as an indicator of intestinal motility, its accurate quantification can show a potential clinical relevance. In this paper, we present a method for the robust detection and segmentation of intestinal content in WCE images, together with its further discrimination between turbid liquid and bubbles. Our proposal is based on a twofold system. First, frames presenting intestinal content are detected by a support vector machine classifier using color and textural information. Second, intestinal content frames are segmented into {turbid, bubbles, and clear} regions. We show a detailed validation using a large dataset. Our system outperforms previous methods and, for the first time, discriminates between turbid from bubbles media.
Address
Corporate Author Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN (down) 1089-7771 ISBN Medium
Area 800 Expedition Conference
Notes MILAB; MV; OR;SIAI Approved no
Call Number Admin @ si @ SDV2012 Serial 2124
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Author Fernando Vilariño; Panagiota Spyridonos; Jordi Vitria; Fernando Azpiroz; Petia Radeva
Title Automatic Detection of Intestinal Juices in Wireless Capsule Video Endoscopy Type Conference Article
Year 2006 Publication 18th International Conference on Pattern Recognition Abbreviated Journal
Volume 4 Issue Pages 719-722
Keywords Clinical diagnosis , Endoscopes , Fluids and secretions , Gabor filters , Hospitals , Image sequence analysis , Intestines , Lighting , Shape , Visualization
Abstract Wireless capsule video endoscopy is a novel and challenging clinical technique, whose major reported drawback relates to the high amount of time needed for video visualization. In this paper, we propose a method for the rejection of the parts of the video resulting not valid for analysis by means of automatic detection of intestinal juices. We applied Gabor filters for the characterization of the bubble-like shape of intestinal juices in fasting patients. Our method achieves a significant reduction in visualization time, with no relevant loss of valid frames. The proposed approach is easily extensible to other image analysis scenarios where the described pattern of bubbles can be found.
Address Hong Kong
Corporate Author Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN (down) 1051-4651 ISBN 0-7695-2521-0 Medium
Area 800 Expedition Conference ICPR
Notes MV;OR;MILAB;SIAI Approved no
Call Number BCNPCL @ bcnpcl @ VSV2006b; IAM @ iam @ VSV2006g Serial 727
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Author Carles Sanchez;F. Javier Sanchez; Antoni Rosell; Debora Gil
Title An illumination model of the trachea appearance in videobronchoscopy images Type Book Chapter
Year 2012 Publication Image Analysis and Recognition Abbreviated Journal LNCS
Volume 7325 Issue Pages 313-320
Keywords Bronchoscopy, tracheal ring, stenosis assesment, trachea appearance model, segmentation
Abstract Videobronchoscopy is a medical imaging technique that allows interactive navigation inside the respiratory pathways. This imaging modality provides realistic images and allows non-invasive minimal intervention procedures. Tracheal procedures are routinary interventions that require assessment of the percentage of obstructed pathway for injury (stenosis) detection. Visual assessment in videobronchoscopic sequences requires high expertise of trachea anatomy and is prone to human error.
This paper introduces an automatic method for the estimation of steneosed trachea percentage reduction in videobronchoscopic images. We look for tracheal rings , whose deformation determines the degree of obstruction. For ring extraction , we present a ring detector based on an illumination and appearance model. This model allows us to parametrise the ring detection. Finally, we can infer optimal estimation parameters for any video resolution.
Address Aveiro, Portugal
Corporate Author Thesis
Publisher Springer Berlin Heidelberg Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Lecture Notes in Computer Science Abbreviated Series Title LNCS
Series Volume Series Issue Edition
ISSN (down) 0302-9743 ISBN 978-3-642-31297-7 Medium
Area 800 Expedition Conference ICIAR
Notes MV;IAM Approved no
Call Number IAM @ iam @ SSR2012 Serial 1898
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Author Fernando Vilariño; Panagiota Spyridonos; Fosca De Iorio; Jordi Vitria; Fernando Azpiroz; Petia Radeva
Title Intestinal Motility Assessment With Video Capsule Endoscopy: Automatic Annotation of Phasic Intestinal Contractions Type Journal Article
Year 2010 Publication IEEE Transactions on Medical Imaging Abbreviated Journal TMI
Volume 29 Issue 2 Pages 246-259
Keywords
Abstract Intestinal motility assessment with video capsule endoscopy arises as a novel and challenging clinical fieldwork. This technique is based on the analysis of the patterns of intestinal contractions shown in a video provided by an ingestible capsule with a wireless micro-camera. The manual labeling of all the motility events requires large amount of time for offline screening in search of findings with low prevalence, which turns this procedure currently unpractical. In this paper, we propose a machine learning system to automatically detect the phasic intestinal contractions in video capsule endoscopy, driving a useful but not feasible clinical routine into a feasible clinical procedure. Our proposal is based on a sequential design which involves the analysis of textural, color, and blob features together with SVM classifiers. Our approach tackles the reduction of the imbalance rate of data and allows the inclusion of domain knowledge as new stages in the cascade. We present a detailed analysis, both in a quantitative and a qualitative way, by providing several measures of performance and the assessment study of interobserver variability. Our system performs at 70% of sensitivity for individual detection, whilst obtaining equivalent patterns to those of the experts for density of contractions.
Address
Corporate Author IEEE Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN (down) 0278-0062 ISBN Medium
Area 800 Expedition Conference
Notes MILAB;MV;OR;SIAI Approved no
Call Number BCNPCL @ bcnpcl @ VSD2010; IAM @ iam @ VSI2010 Serial 1281
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Author Jorge Bernal; F. Javier Sanchez; Fernando Vilariño
Title Towards Automatic Polyp Detection with a Polyp Appearance Model Type Journal Article
Year 2012 Publication Pattern Recognition Abbreviated Journal PR
Volume 45 Issue 9 Pages 3166-3182
Keywords Colonoscopy,PolypDetection,RegionSegmentation,SA-DOVA descriptot
Abstract This work aims at the automatic polyp detection by using a model of polyp appearance in the context of the analysis of colonoscopy videos. Our method consists of three stages: region segmentation, region description and region classification. The performance of our region segmentation method guarantees that if a polyp is present in the image, it will be exclusively and totally contained in a single region. The output of the algorithm also defines which regions can be considered as non-informative. We define as our region descriptor the novel Sector Accumulation-Depth of Valleys Accumulation (SA-DOVA), which provides a necessary but not sufficient condition for the polyp presence. Finally, we classify our segmented regions according to the maximal values of the SA-DOVA descriptor. Our preliminary classification results are promising, especially when classifying those parts of the image that do not contain a polyp inside.
Address
Corporate Author Thesis
Publisher Elsevier Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN (down) 0031-3203 ISBN Medium
Area 800 Expedition Conference IbPRIA
Notes MV;SIAI Approved no
Call Number Admin @ si @ BSV2012; IAM @ iam Serial 1997
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Author Fernando Vilariño; Ludmila I. Kuncheva; Petia Radeva
Title ROC curves and video analysis optimization in intestinal capsule endoscopy Type Journal Article
Year 2006 Publication Pattern Recognition Letters Abbreviated Journal PRL
Volume 27 Issue 8 Pages 875–881
Keywords ROC curves; Classification; Classifiers ensemble; Detection of intestinal contractions; Imbalanced classes; Wireless capsule endoscopy
Abstract Wireless capsule endoscopy involves inspection of hours of video material by a highly qualified professional. Time episodes corresponding to intestinal contractions, which are of interest to the physician constitute about 1% of the video. The problem is to label automatically time episodes containing contractions so that only a fraction of the video needs inspection. As the classes of contraction and non-contraction images in the video are largely imbalanced, ROC curves are used to optimize the trade-off between false positive and false negative rates. Classifier ensemble methods and simple classifiers were examined. Our results reinforce the claims from recent literature that classifier ensemble methods specifically designed for imbalanced problems have substantial advantages over simple classifiers and standard classifier ensembles. By using ROC curves with the bagging ensemble method the inspection time can be drastically reduced at the expense of a small fraction of missed contractions.
Address
Corporate Author Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN (down) ISBN Medium
Area 800 Expedition Conference
Notes MILAB;MV;SIAI Approved no
Call Number BCNPCL @ bcnpcl @ VKR2006; IAM @ iam @ VKR2006 Serial 647
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Author Panagiota Spyridonos; Fernando Vilariño; Jordi Vitria; Fernando Azpiroz; Petia Radeva
Title Anisotropic Feature Extraction from Endoluminal Images for Detection of Intestinal Contractions Type Book Chapter
Year 2006 Publication 9th International Conference on Medical Image Computing and Computer–Assisted Intervention Abbreviated Journal
Volume 4191 Issue Pages 161–168
Keywords
Abstract Wireless endoscopy is a very recent and at the same time unique technique allowing to visualize and study the occurrence of con- tractions and to analyze the intestine motility. Feature extraction is es- sential for getting efficient patterns to detect contractions in wireless video endoscopy of small intestine. We propose a novel method based on anisotropic image filtering and efficient statistical classification of con- traction features. In particular, we apply the image gradient tensor for mining informative skeletons from the original image and a sequence of descriptors for capturing the characteristic pattern of contractions. Fea- tures extracted from the endoluminal images were evaluated in terms of their discriminatory ability in correct classifying images as either belong- ing to contractions or not. Classification was performed by means of a support vector machine classifier with a radial basis function kernel. Our classification rates gave sensitivity of the order of 90.84% and specificity of the order of 94.43% respectively. These preliminary results highlight the high efficiency of the selected descriptors and support the feasibility of the proposed method in assisting the automatic detection and analysis of contractions.
Address Copenhagen (Denmark)
Corporate Author Thesis
Publisher Springer Verlag Place of Publication Berlin Heidelberg Editor R. Larsen, M. Nielsen, and J. Sporring
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title LNCS
Series Volume Series Issue Edition
ISSN (down) ISBN Medium
Area 800 Expedition Conference MICCAI06
Notes MV;OR;MILAB;SIAI Approved no
Call Number BCNPCL @ bcnpcl @ SVV2006; IAM @ iam @ SVV2006 Serial 725
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Author Fernando Vilariño; Panagiota Spyridonos; Jordi Vitria; Fernando Azpiroz; Petia Radeva
Title Cascade analysis for intestinal contraction detection Type Conference Article
Year 2006 Publication 20th International Congress and exhibition Computer Assisted Radiology and Surgery Abbreviated Journal
Volume Issue Pages 9-10
Keywords intestine video analysis, anisotropic features, support vector machine, cascade of classifiers
Abstract In this work, we address the study of intestinal contractions in a novel approach based on a machine learning framework to process data from Wireless Capsule Video Endoscopy. Wireless endoscopy represents a unique way to visualize the intestine motility by creating long videos to visualize intestine dynamics. In this paper we argue that to analyze huge amount of wireless endoscopy data and define robust methods for contraction detection we should base our approach on sophisticated machine learning techniques. In particular, we propose a cascade of classifiers in order to remove different physiological phenomenon and obtain the motility pattern of small intestines. Our results show obtaining high specificity and sensitivity rates that highlight the high efficiency of the selected approach and support the feasibility of the proposed methodology in the automatic detection and analysis of intestine contractions.
Address Osaka (Japan)
Corporate Author Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN (down) ISBN Medium
Area 800 Expedition Conference CARS
Notes MV;OR;MILAB;SIAI Approved no
Call Number BCNPCL @ bcnpcl @ VSV2006a; IAM @ iam @ VSV2006h Serial 726
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Author Fernando Vilariño; Panagiota Spyridonos; Jordi Vitria; Carolina Malagelada; Petia Radeva
Title Linear Radial Patterns Characterization for Automatic Detection of Tonic Intestinal Contractions Type Book Chapter
Year 2006 Publication 11th Iberoamerican Congress on Pattern Recognition Abbreviated Journal
Volume 4225 Issue Pages 178–187
Keywords
Abstract This work tackles the categorization of general linear radial patterns by means of the valleys and ridges detection and the use of descriptors of directional information, which are provided by steerable filters in different regions of the image. We successfully apply our proposal in the specific case of automatic detection of tonic contractions in video capsule endoscopy, which represent a paradigmatic example of linear radial patterns.
Address Cancun (Mexico)
Corporate Author Thesis
Publisher Springer Verlag Place of Publication Berlin Heidelberg Editor .F. Mart ́ınez-Trinidad et al
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title LNCS
Series Volume Series Issue Edition
ISSN (down) ISBN Medium
Area 800 Expedition Conference
Notes MV;OR;MILAB;SIAI Approved no
Call Number BCNPCL @ bcnpcl @ VSV2006c; IAM @ iam @ VSB2006f Serial 728
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Author Fernando Vilariño; Panagiota Spyridonos; Jordi Vitria; Carolina Malagelada; Petia Radeva
Title A Machine Learning framework using SOMs: Applications in the Intestinal Motility Assessment Type Book Chapter
Year 2006 Publication 11th Iberoamerican Congress on Pattern Recognition Abbreviated Journal
Volume 4225 Issue Pages 188–197
Keywords
Abstract Small Bowel Motility Assessment by means of Wireless Capsule Video Endoscopy constitutes a novel clinical methodology in which a capsule with a micro-camera attached to it is swallowed by the patient, emitting a RF signal which is recorded as a video of its trip throughout the gut. In order to overcome the main drawbacks associated with this technique -mainly related to the large amount of visualization time required-, our efforts have been focused on the development of a machine learning system, built up in sequential stages, which provides the specialists with the useful part of the video, rejecting those parts not valid for analysis. We successfully used Self Organized Maps in a general semi-supervised framework with the aim of tackling the different learning stages of our system. The analysis of the diverse types of images and the automatic detection of intestinal contractions is performed under the perspective of intestinal motility assessment in a clinical environment.
Address Cancun (Mexico)
Corporate Author Thesis
Publisher Springer Verlag Place of Publication Berlin-Heidelberg Editor J.P. Martinez–Trinidad et al
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title LNCS
Series Volume Series Issue Edition
ISSN (down) ISBN Medium
Area 800 Expedition Conference CIARP06
Notes MV;OR;MILAB;SIAI Approved no
Call Number BCNPCL @ bcnpcl @ VSV2006d; IAM @ iam @ VSV2006e Serial 729
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Author Fernando Vilariño
Title A Machine Learning Approach for Intestinal Motility Assessment with Capsule Endoscopy Type Book Whole
Year 2006 Publication PhD Thesis, Universitat Autonoma de Barcelona-CVC Abbreviated Journal
Volume Issue Pages
Keywords
Abstract Intestinal motility assessment with video capsule endoscopy arises as a novel and challenging clinical fieldwork. This technique is based on the analysis of the patterns of intestinal contractions obtained by labelling all the motility events present in a video provided by a capsule with a wireless micro-camera, which is ingested by the patient. However, the visual analysis of these video sequences presents several im- portant drawbacks, mainly related to both the large amount of time needed for the visualization process, and the low prevalence of intestinal contractions in video.
In this work we propose a machine learning system to automatically detect the intestinal contractions in video capsule endoscopy, driving a very useful but not fea- sible clinical routine into a feasible clinical procedure. Our proposal is divided into two different parts: The first part tackles the problem of the automatic detection of phasic contractions in capsule endoscopy videos. Phasic contractions are dynamic events spanning about 4-5 seconds, which show visual patterns with a high variability. Our proposal is based on a sequential design which involves the analysis of textural, color and blob features with powerful classifiers such as SVM. This approach appears to cope with two basic aims: the reduction of the imbalance rate of the data set, and the modular construction of the system, which adds the capability of including domain knowledge as new stages in the cascade. The second part of the current work tackles the problem of the automatic detection of tonic contractions. Tonic contrac- tions manifest in capsule endoscopy as a sustained pattern of the folds and wrinkles of the intestine, which may be prolonged for an undetermined span of time. Our proposal is based on the analysis of the wrinkle patterns, presenting a comparative study of diverse features and classification methods, and providing a set of appro- priate descriptors for their characterization. We provide a detailed analysis of the performance achieved by our system both in a qualitative and a quantitative way.
Address CVC (UAB)
Corporate Author Thesis Ph.D. thesis
Publisher Place of Publication Editor Petia Radeva
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue 84-933652-7-0 Edition
ISSN (down) ISBN Medium
Area 800 Expedition Conference
Notes MV;SIAI Approved no
Call Number Admin @ si @ Vil2006; IAM @ iam @ Vil2006 Serial 738
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Author Santiago Segui; Laura Igual; Fernando Vilariño; Petia Radeva; Carolina Malagelada; Fernando Azpiroz; Jordi Vitria
Title Diagnostic System for Intestinal Motility Disfunctions Using Video Capsule Endoscopy Type Book Chapter
Year 2008 Publication Computer Vision Systems. 6th International Abbreviated Journal
Volume 5008 Issue Pages 251–260
Keywords
Abstract Wireless Video Capsule Endoscopy is a clinical technique consisting of the analysis of images from the intestine which are pro- vided by an ingestible device with a camera attached to it. In this paper we propose an automatic system to diagnose severe intestinal motility disfunctions using the video endoscopy data. The system is based on the application of computer vision techniques within a machine learn- ing framework in order to obtain the characterization of diverse motil- ity events from video sequences. We present experimental results that demonstrate the effectiveness of the proposed system and compare them with the ground-truth provided by the gastroenterologists.
Address Santorini (Greece)
Corporate Author Thesis
Publisher Springer-Verlag Place of Publication Berlin Heidelberg Editor A. Gasteratos, M. Vincze, and J.K. Tsotsos
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title LNCS
Series Volume Series Issue Edition
ISSN (down) ISBN 978-3-540-79546-9 Medium
Area 800 Expedition Conference ICVS
Notes OR; MV; MILAB; SIAI Approved no
Call Number BCNPCL @ bcnpcl @ SIV2008; IAM @ iam @ SIV2008 Serial 962
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Author Jorge Bernal; Fernando Vilariño; F. Javier Sanchez
Title Feature Detectors and Feature Descriptors: Where We Are Now Type Report
Year 2010 Publication CVC Technical Report Abbreviated Journal
Volume 154 Issue Pages
Keywords
Abstract Feature Detection and Feature Description are clearly nowadays topics. Many Computer Vision applications rely on the use of several of these techniques in order to extract the most significant aspects of an image so they can help in some tasks such as image retrieval, image registration, object recognition, object categorization and texture classification, among others. In this paper we define what Feature Detection and Description are and then we present an extensive collection of several methods in order to show the different techniques that are being used right now. The aim of this report is to provide a glimpse of what is being used currently in these fields and to serve as a starting point for future endeavours.
Address
Corporate Author Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN (down) ISBN Medium
Area 800 Expedition Conference
Notes MV;SIAI Approved no
Call Number Admin @ si @ BVS2010; IAM @ iam @ BVS2010 Serial 1348
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Author Jorge Bernal; F. Javier Sanchez; Fernando Vilariño
Title Reduction of Pattern Search Area in Colonoscopy Images by Merging Non-Informative Regions Type Conference Article
Year 2010 Publication 28th Congreso Anual de la Sociedad Española de Ingeniería Biomédica Abbreviated Journal
Volume Issue Pages
Keywords
Abstract One of the first usual steps in pattern recognition schemas is image segmentation, in order to reduce the dimensionality of the problem and manage smaller quantity of data. In our case as we are pursuing real-time colon cancer polyp detection, this step is crucial. In this paper we present a non-informative region estimation algorithm that will let us discard some parts of the image where we will not expect to find colon cancer polyps. The performance of our approach will be measured in terms of both non-informative areas elimination and polyps’ areas preserving. The results obtained show the importance of having correct non- informative region estimation in order to fasten the whole recognition process.
Address Madrid (Spain)
Corporate Author Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN (down) ISBN Medium
Area 800 Expedition Conference CASEIB
Notes MV;SIAI Approved no
Call Number Admin @ si @ BSV2010 Serial 1469
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