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| Author | Mariano Vazquez; Ruth Aris; Guillaume Hozeaux; R.Aubry; P.Villar;Jaume Garcia ; Debora Gil; Francesc Carreras | ||||
| Title | A massively parallel computational electrophysiology model of the heart | Type | Journal Article | ||
| Year | 2011 | Publication | International Journal for Numerical Methods in Biomedical Engineering | Abbreviated Journal | IJNMBE |
| Volume | 27 | Issue | Pages | 1911-1929 | |
| Keywords | computational electrophysiology; parallelization; finite element methods | ||||
| Abstract | This paper presents a patient-sensitive simulation strategy capable of using the most efficient way the high-performance computational resources. The proposed strategy directly involves three different players: Computational Mechanics Scientists (CMS), Image Processing Scientists and Cardiologists, each one mastering its own expertise area within the project. This paper describes the general integrative scheme but focusing on the CMS side presents a massively parallel implementation of computational electrophysiology applied to cardiac tissue simulation. The paper covers different angles of the computational problem: equations, numerical issues, the algorithm and parallel implementation. The proposed methodology is illustrated with numerical simulations testing all the different possibilities, ranging from small domains up to very large ones. A key issue is the almost ideal scalability not only for large and complex problems but also for medium-size meshes. The explicit formulation is particularly well suited for solving this highly transient problems, with very short time-scale. | ||||
| Address | Swansea (UK) | ||||
| Corporate Author | John Wiley & Sons, Ltd. | Thesis | |||
| Publisher | John Wiley & Sons, Ltd. | Place of Publication | Editor | ||
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| Notes | IAM | Approved | no | ||
| Call Number | IAM @ iam @ VAH2011 | Serial | 1198 | ||
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| Author | Daniel Ponsa; Joan Serrat; Antonio Lopez | ||||
| Title | On-board image-based vehicle detection and tracking | Type | Journal Article | ||
| Year | 2011 | Publication | Transactions of the Institute of Measurement and Control | Abbreviated Journal | TIM |
| Volume | 33 | Issue | 7 | Pages | 783-805 |
| Keywords | vehicle detection | ||||
| Abstract | In this paper we present a computer vision system for daytime vehicle detection and localization, an essential step in the development of several types of advanced driver assistance systems. It has a reduced processing time and high accuracy thanks to the combination of vehicle detection with lane-markings estimation and temporal tracking of both vehicles and lane markings. Concerning vehicle detection, our main contribution is a frame scanning process that inspects images according to the geometry of image formation, and with an Adaboost-based detector that is robust to the variability in the different vehicle types (car, van, truck) and lighting conditions. In addition, we propose a new method to estimate the most likely three-dimensional locations of vehicles on the road ahead. With regards to the lane-markings estimation component, we have two main contributions. First, we employ a different image feature to the other commonly used edges: we use ridges, which are better suited to this problem. Second, we adapt RANSAC, a generic robust estimation method, to fit a parametric model of a pair of lane markings to the image features. We qualitatively assess our vehicle detection system in sequences captured on several road types and under very different lighting conditions. The processed videos are available on a web page associated with this paper. A quantitative evaluation of the system has shown quite accurate results (a low number of false positives and negatives) at a reasonable computation time. | ||||
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| Notes | ADAS | Approved | no | ||
| Call Number | ADAS @ adas @ PSL2011 | Serial | 1413 | ||
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| Author | Jose Manuel Alvarez; Antonio Lopez | ||||
| Title | Road Detection Based on Illuminant Invariance | Type | Journal Article | ||
| Year | 2011 | Publication | IEEE Transactions on Intelligent Transportation Systems | Abbreviated Journal | TITS |
| Volume | 12 | Issue | 1 | Pages | 184-193 |
| Keywords | road detection | ||||
| Abstract | By using an onboard camera, it is possible to detect the free road surface ahead of the ego-vehicle. Road detection is of high relevance for autonomous driving, road departure warning, and supporting driver-assistance systems such as vehicle and pedestrian detection. The key for vision-based road detection is the ability to classify image pixels as belonging or not to the road surface. Identifying road pixels is a major challenge due to the intraclass variability caused by lighting conditions. A particularly difficult scenario appears when the road surface has both shadowed and nonshadowed areas. Accordingly, we propose a novel approach to vision-based road detection that is robust to shadows. The novelty of our approach relies on using a shadow-invariant feature space combined with a model-based classifier. The model is built online to improve the adaptability of the algorithm to the current lighting and the presence of other vehicles in the scene. The proposed algorithm works in still images and does not depend on either road shape or temporal restrictions. Quantitative and qualitative experiments on real-world road sequences with heavy traffic and shadows show that the method is robust to shadows and lighting variations. Moreover, the proposed method provides the highest performance when compared with hue-saturation-intensity (HSI)-based algorithms. | ||||
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| Notes | ADAS | Approved | no | ||
| Call Number | ADAS @ adas @ AlL2011 | Serial | 1456 | ||
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| Author | Debora Gil; Aura Hernandez-Sabate; Mireia Brunat;Steven Jansen; Jordi Martinez-Vilalta | ||||
| Title | Structure-preserving smoothing of biomedical images | Type | Journal Article | ||
| Year | 2011 | Publication | Pattern Recognition | Abbreviated Journal | PR |
| Volume | 44 | Issue | 9 | Pages | 1842-1851 |
| Keywords | Non-linear smoothing; Differential geometry; Anatomical structures; segmentation; Cardiac magnetic resonance; Computerized tomography | ||||
| Abstract | Smoothing of biomedical images should preserve gray-level transitions between adjacent tissues, while restoring contours consistent with anatomical structures. Anisotropic diffusion operators are based on image appearance discontinuities (either local or contextual) and might fail at weak inter-tissue transitions. Meanwhile, the output of block-wise and morphological operations is prone to present a block structure due to the shape and size of the considered pixel neighborhood. In this contribution, we use differential geometry concepts to define a diffusion operator that restricts to image consistent level-sets. In this manner, the final state is a non-uniform intensity image presenting homogeneous inter-tissue transitions along anatomical structures, while smoothing intra-structure texture. Experiments on different types of medical images (magnetic resonance, computerized tomography) illustrate its benefit on a further process (such as segmentation) of images. | ||||
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| ISSN | 0031-3203 | ISBN |
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| Notes | IAM; ADAS | Approved | no | ||
| Call Number | IAM @ iam @ GHB2011 | Serial | 1526 | ||
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| Author | Aura Hernandez-Sabate; Debora Gil; Jaume Garcia; Enric Marti | ||||
| Title | Image-based Cardiac Phase Retrieval in Intravascular Ultrasound Sequences | Type | Journal Article | ||
| Year | 2011 | Publication | IEEE Transactions on Ultrasonics, Ferroelectrics and Frequency Control | Abbreviated Journal | T-UFFC |
| Volume | 58 | Issue | 1 | Pages | 60-72 |
| Keywords | 3-D exploring; ECG; band-pass filter; cardiac motion; cardiac phase retrieval; coronary arteries; electrocardiogram signal; image intensity local mean evolution; image-based cardiac phase retrieval; in vivo pullbacks acquisition; intravascular ultrasound sequences; longitudinal motion; signal extrema; time 36 ms; band-pass filters; biomedical ultrasonics; cardiovascular system; electrocardiography; image motion analysis; image retrieval; image sequences; medical image processing; ultrasonic imaging | ||||
| Abstract | Longitudinal motion during in vivo pullbacks acquisition of intravascular ultrasound (IVUS) sequences is a major artifact for 3-D exploring of coronary arteries. Most current techniques are based on the electrocardiogram (ECG) signal to obtain a gated pullback without longitudinal motion by using specific hardware or the ECG signal itself. We present an image-based approach for cardiac phase retrieval from coronary IVUS sequences without an ECG signal. A signal reflecting cardiac motion is computed by exploring the image intensity local mean evolution. The signal is filtered by a band-pass filter centered at the main cardiac frequency. Phase is retrieved by computing signal extrema. The average frame processing time using our setup is 36 ms. Comparison to manually sampled sequences encourages a deeper study comparing them to ECG signals. | ||||
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| ISSN | 0885-3010 | ISBN |
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| Notes | IAM;ADAS | Approved | no | ||
| Call Number | IAM @ iam @ HGG2011 | Serial | 1546 | ||
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| Author | Aura Hernandez-Sabate; Debora Gil; David Roche; Monica M. S. Matsumoto; Sergio S. Furuie | ||||
| Title | Inferring the Performance of Medical Imaging Algorithms | Type | Conference Article | ||
| Year | 2011 | Publication | 14th International Conference on Computer Analysis of Images and Patterns | Abbreviated Journal | |
| Volume | 6854 | Issue | Pages | 520-528 | |
| Keywords | Validation, Statistical Inference, Medical Imaging Algorithms. | ||||
| Abstract | Evaluation of the performance and limitations of medical imaging algorithms is essential to estimate their impact in social, economic or clinical aspects. However, validation of medical imaging techniques is a challenging task due to the variety of imaging and clinical problems involved, as well as, the difficulties for systematically extracting a reliable solely ground truth. Although specific validation protocols are reported in any medical imaging paper, there are still two major concerns: definition of standardized methodologies transversal to all problems and generalization of conclusions to the whole clinical data set.
We claim that both issues would be fully solved if we had a statistical model relating ground truth and the output of computational imaging techniques. Such a statistical model could conclude to what extent the algorithm behaves like the ground truth from the analysis of a sampling of the validation data set. We present a statistical inference framework reporting the agreement and describing the relationship of two quantities. We show its transversality by applying it to validation of two different tasks: contour segmentation and landmark correspondence. |
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| Address | Sevilla | ||||
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| Publisher | Springer-Verlag Berlin Heidelberg | Place of Publication | Berlin | Editor | Pedro Real; Daniel Diaz-Pernil; Helena Molina-Abril; Ainhoa Berciano; Walter Kropatsch |
| Language | Summary Language | Original Title | |||
| Series Editor | Series Title | L | Abbreviated Series Title | LNCS | |
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| Area | Expedition | Conference | CAIP | ||
| Notes | IAM; ADAS | Approved | no | ||
| Call Number | IAM @ iam @ HGR2011 | Serial | 1676 | ||
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| Author | David Roche; Debora Gil; Jesus Giraldo | ||||
| Title | Using statistical inference for designing termination conditions ensuring convergence of Evolutionary Algorithms | Type | Conference Article | ||
| Year | 2011 | Publication | 11th European Conference on Artificial Life | Abbreviated Journal | |
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| Abstract | A main challenge in Evolutionary Algorithms (EAs) is determining a termination condition ensuring stabilization close to the optimum in real-world applications. Although for known test functions distribution-based quantities are good candidates (as far as suitable parameters are used), in real-world problems an open question still remains unsolved. How can we estimate an upper-bound for the termination condition value ensuring a given accuracy for the (unknown) EA solution?
We claim that the termination problem would be fully solved if we defined a quantity (depending only on the EA output) behaving like the solution accuracy. The open question would be, then, satisfactorily answered if we had a model relating both quantities, since accuracy could be predicted from the alternative quantity. We present a statistical inference framework addressing two topics: checking the correlation between the two quantities and defining a regression model for predicting (at a given confidence level) accuracy values from the EA output. |
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| Address | Paris, France | ||||
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| Area | Expedition | Conference | ECAL | ||
| Notes | IAM; | Approved | no | ||
| Call Number | IAM @ iam @ RGG2011b | Serial | 1678 | ||
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| Author | Ferran Poveda; Debora Gil ;Albert Andaluz ;Enric Marti | ||||
| Title | Multiscale Tractography for Representing Heart Muscular Architecture | Type | Conference Article | ||
| Year | 2011 | Publication | In MICCAI 2011 Workshop on Computational Diffusion MRI | Abbreviated Journal | |
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| Abstract | Deep understanding of myocardial structure of the heart would unravel crucial knowledge for clinical and medical procedures. Although the muscular architecture of the heart has been debated by countless researchers, the controversy is still alive. Diffusion Tensor MRI, DT-MRI, is a unique imaging technique for computational validation of the muscular structure of the heart. By the complex arrangement of myocites, existing techniques can not provide comprehensive descriptions of the global muscular architecture. In this paper we introduce a multiresolution reconstruction technique based on DT-MRI streamlining for simplified global myocardial model generation. Our reconstructions can restore the most complex myocardial structures and indicate a global helical organization | ||||
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| Language | English | Summary Language | english | Original Title | |
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| Area | Expedition | Conference | CDRMI | ||
| Notes | IAM | Approved | no | ||
| Call Number | IAM @ iam @ PGA2011 | Serial | 1681 | ||
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| Author | Patricia Marquez; Debora Gil; Aura Hernandez-Sabate | ||||
| Title | A Confidence Measure for Assessing Optical Flow Accuracy in the Absence of Ground Truth | Type | Conference Article | ||
| Year | 2011 | Publication | IEEE International Conference on Computer Vision – Workshops | Abbreviated Journal | |
| Volume | Issue | Pages | 2042-2049 | ||
| Keywords | IEEE International Conference on Computer Vision – Workshops | ||||
| Abstract | Optical flow is a valuable tool for motion analysis in autonomous navigation systems. A reliable application requires determining the accuracy of the computed optical flow. This is a main challenge given the absence of ground truth in real world sequences. This paper introduces a measure of optical flow accuracy for Lucas-Kanade based flows in terms of the numerical stability of the data-term. We call this measure optical flow condition number. A statistical analysis over ground-truth data show a good statistical correlation between the condition number and optical flow error. Experiments on driving sequences illustrate its potential for autonomous navigation systems. | ||||
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| Publisher | IEEE | Place of Publication | Barcelona (Spain) | Editor | |
| Language | English | Summary Language | English | Original Title | |
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| Area | Expedition | Conference | ICCVW | ||
| Notes | IAM; ADAS | Approved | no | ||
| Call Number | IAM @ iam @ MGH2011 | Serial | 1682 | ||
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| Author | Jorge Bernal; F. Javier Sanchez; Fernando Vilariño | ||||
| Title | Current Challenges on Polyp Detection in Colonoscopy Videos: From Region Segmentation to Region Classification. a Pattern Recognition-based Approach.ased Approach | Type | Conference Article | ||
| Year | 2011 | Publication | 2nd International Workshop on Medical Image Analysis and Descriptionfor Diagnosis Systems | Abbreviated Journal | |
| Volume | Issue | Pages | 62-71 | ||
| Keywords | Medical Imaging, Colonoscopy, Pattern Recognition, Segmentation, Polyp Detection, Region Description, Machine Learning, Real-time. | ||||
| Abstract | In this paper we present our approach on real-time polyp detection in colonoscopy videos. Our method consists of three stages: Image Segmentation, Region Description and Image Classification. Taking into account the constraints of our project, we introduce our segmentation system that is based on the model of appearance of the polyp that we have defined after observing real videos from colonoscopy processes. The output of this stage will ideally be a low number of regions of which one of them should cover the whole polyp region (if there is one in the image). This regions will be described in terms of features and, as a result of a machine learning schema, classified based on the values that they have for the several features that we will use on their description. Although we are still on the early stages of the project, we present some preliminary segmentation results that indicates that we are going in a good direction. | ||||
| Address | Rome, Italy | ||||
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| Publisher | SciTePress | Place of Publication | Editor | Djemal, Khalifa | |
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| Area | 800 | Expedition | Conference | MIAD | |
| Notes | MV;SIAI | Approved | no | ||
| Call Number | IAM @ iam @ BSV2011a | Serial | 1695 | ||
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| Author | Jorge Bernal; F. Javier Sanchez; Fernando Vilariño | ||||
| Title | Integration of Valley Orientation Distribution for Polyp Region Identification in Colonoscopy | Type | Conference Article | ||
| Year | 2011 | Publication | In MICCAI 2011 Workshop on Computational and Clinical Applications in Abdominal Imaging | Abbreviated Journal | |
| Volume | 6668 | Issue | Pages | 76-83 | |
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| Abstract | This work presents a region descriptor based on the integration of the information that the depth of valleys image provides. The depth of valleys image is based on the presence of intensity valleys around polyps due to the image acquisition. Our proposed method consists of defining, for each point, a series of radial sectors around it and then accumulates the maxima of the depth of valleys image only if the orientation of the intensity valley coincides with the orientation of the sector above. We apply our descriptor to a prior segmentation of the images and we present promising results on polyp detection, outperforming other approaches that also integrate depth of valleys information. | ||||
| Address | Toronto, Canada | ||||
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| Publisher | Springer Link | Place of Publication | Editor | ||
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| Series Editor | Series Title | Lecture Notes in Computer Science | Abbreviated Series Title | ||
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| Area | 800 | Expedition | Conference | ABI | |
| Notes | MV;SIAI | Approved | no | ||
| Call Number | IAM @ iam @ BSV2011d | Serial | 1698 | ||
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| Author | Panagiota Spyridonos; Fernando Vilariño; Jordi Vitria; Petia Radeva; Fernando Azpiroz; Juan Malagelada | ||||
| Title | Device, system and method for automatic detection of contractile activity in an image frame | Type | Patent | ||
| Year | 2011 | Publication | US 2011/0044515 A1 | Abbreviated Journal | |
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| Abstract | A device, system and method for automatic detection of contractile activity of a body lumen in an image frame is provided, wherein image frames during contractile activity are captured and/or image frames including contractile activity are automatically detected, such as through pattern recognition and/or feature extraction to trace image frames including contractions, e.g., with wrinkle patterns. A manual procedure of annotation of contractions, e.g. tonic contractions in capsule endoscopy, may consist of the visualization of the whole video by a specialist, and the labeling of the contraction frames. Embodiments of the present invention may be suitable for implementation in an in vivo imaging system. | ||||
| Address | Pearl Cohen Zedek Latzer, LLP, 1500 Broadway 12th Floor, New York (NY) 10036 (US) | ||||
| Corporate Author | US Patent Office | Thesis | |||
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| Notes | MV;OR;MILAB;SIAI | Approved | no | ||
| Call Number | IAM @ iam @ SVV2011 | Serial | 1701 | ||
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| Author | Gerard Lacey; Fernando Vilariño | ||||
| Title | Endoscopy system with motion sensors | Type | Patent | ||
| Year | 2011 | Publication | US 2011/0032347 A1 | Abbreviated Journal | |
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| Abstract | An endoscopy system (1) comprises an endoscope (2) with a camera (3) at its tip. The endoscope extends through an endoscope guide (4) for guiding movement of the endoscope and for measurement of its movement as it enters the body. The guide (4) comprises a generally conical body (5) having a through passage (105) through which the endoscope (2) extends. A motion sensor comprises an optical transmitter (7) and a detector (8) mounted alongside the passage (105) to measure the insertion-withdrawal linear motion and also rotation of the endoscope by the endoscopist's hand. The system (1) also comprises a flexure controller (10) having wheels operated by the endoscopist. The camera (3), the motion sensor (7/8), and the flexure controller (10) are all connected to a processor (11) which feeds a display. | ||||
| Address | Jacobson Holman PPLC; 400 Seventh Street, N.W. Suite 600; Whashington DC 20004 DC | ||||
| Corporate Author | USPTO | Thesis | |||
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| Area | 800 | Expedition | Conference | ||
| Notes | MV;SIAI | Approved | no | ||
| Call Number | IAM @ iam @ LaV2011 | Serial | 1703 | ||
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| Author | Ferran Diego; Daniel Ponsa; Joan Serrat; Antonio Lopez | ||||
| Title | Video Alignment for Change Detection | Type | Journal Article | ||
| Year | 2011 | Publication | IEEE Transactions on Image Processing | Abbreviated Journal | TIP |
| Volume | 20 | Issue | 7 | Pages | 1858-1869 |
| Keywords | video alignment | ||||
| Abstract | In this work, we address the problem of aligning two video sequences. Such alignment refers to synchronization, i.e., the establishment of temporal correspondence between frames of the first and second video, followed by spatial registration of all the temporally corresponding frames. Video synchronization and alignment have been attempted before, but most often in the relatively simple cases of fixed or rigidly attached cameras and simultaneous acquisition. In addition, restrictive assumptions have been applied, including linear time correspondence or the knowledge of the complete trajectories of corresponding scene points; to some extent, these assumptions limit the practical applicability of any solutions developed. We intend to solve the more general problem of aligning video sequences recorded by independently moving cameras that follow similar trajectories, based only on the fusion of image intensity and GPS information. The novelty of our approach is to pose the synchronization as a MAP inference problem on a Bayesian network including the observations from these two sensor types, which have been proved complementary. Alignment results are presented in the context of videos recorded from vehicles driving along the same track at different times, for different road types. In addition, we explore two applications of the proposed video alignment method, both based on change detection between aligned videos. One is the detection of vehicles, which could be of use in ADAS. The other is online difference spotting videos of surveillance rounds. | ||||
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| Notes | ADAS; IF | Approved | no | ||
| Call Number | DPS 2011; ADAS @ adas @ dps2011 | Serial | 1705 | ||
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| Author | Marco Pedersoli; Jordi Gonzalez; Andrew Bagdanov; Xavier Roca | ||||
| Title | Efficient Discriminative Multiresolution Cascade for Real-Time Human Detection Applications | Type | Journal Article | ||
| Year | 2011 | Publication | Pattern Recognition Letters | Abbreviated Journal | PRL |
| Volume | 32 | Issue | 13 | Pages | 1581-1587 |
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| Abstract | Human detection is fundamental in many machine vision applications, like video surveillance, driving assistance, action recognition and scene understanding. However in most of these applications real-time performance is necessary and this is not achieved yet by current detection methods.
This paper presents a new method for human detection based on a multiresolution cascade of Histograms of Oriented Gradients (HOG) that can highly reduce the computational cost of detection search without affecting accuracy. The method consists of a cascade of sliding window detectors. Each detector is a linear Support Vector Machine (SVM) composed of HOG features at different resolutions, from coarse at the first level to fine at the last one. In contrast to previous methods, our approach uses a non-uniform stride of the sliding window that is defined by the feature resolution and allows the detection to be incrementally refined as going from coarse-to-fine resolution. In this way, the speed-up of the cascade is not only due to the fewer number of features computed at the first levels of the cascade, but also to the reduced number of windows that need to be evaluated at the coarse resolution. Experimental results show that our method reaches a detection rate comparable with the state-of-the-art of detectors based on HOG features, while at the same time the detection search is up to 23 times faster. |
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| Notes | ISE | Approved | no | ||
| Call Number | Admin @ si @ PGB2011a | Serial | 1707 | ||
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