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Author Mariano Vazquez; Ruth Aris; Guillaume Hozeaux; R.Aubry; P.Villar;Jaume Garcia ; Debora Gil; Francesc Carreras
Title A massively parallel computational electrophysiology model of the heart Type Journal Article
Year 2011 Publication International Journal for Numerical Methods in Biomedical Engineering Abbreviated Journal IJNMBE
Volume 27 Issue Pages 1911-1929
Keywords computational electrophysiology; parallelization; finite element methods
Abstract This paper presents a patient-sensitive simulation strategy capable of using the most efficient way the high-performance computational resources. The proposed strategy directly involves three different players: Computational Mechanics Scientists (CMS), Image Processing Scientists and Cardiologists, each one mastering its own expertise area within the project. This paper describes the general integrative scheme but focusing on the CMS side presents a massively parallel implementation of computational electrophysiology applied to cardiac tissue simulation. The paper covers different angles of the computational problem: equations, numerical issues, the algorithm and parallel implementation. The proposed methodology is illustrated with numerical simulations testing all the different possibilities, ranging from small domains up to very large ones. A key issue is the almost ideal scalability not only for large and complex problems but also for medium-size meshes. The explicit formulation is particularly well suited for solving this highly transient problems, with very short time-scale.
Address Swansea (UK)
Corporate Author John Wiley & Sons, Ltd. Thesis
Publisher John Wiley & Sons, Ltd. Place of Publication Editor (up)
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area Expedition Conference
Notes IAM Approved no
Call Number IAM @ iam @ VAH2011 Serial 1198
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Author Daniel Ponsa; Joan Serrat; Antonio Lopez
Title On-board image-based vehicle detection and tracking Type Journal Article
Year 2011 Publication Transactions of the Institute of Measurement and Control Abbreviated Journal TIM
Volume 33 Issue 7 Pages 783-805
Keywords vehicle detection
Abstract In this paper we present a computer vision system for daytime vehicle detection and localization, an essential step in the development of several types of advanced driver assistance systems. It has a reduced processing time and high accuracy thanks to the combination of vehicle detection with lane-markings estimation and temporal tracking of both vehicles and lane markings. Concerning vehicle detection, our main contribution is a frame scanning process that inspects images according to the geometry of image formation, and with an Adaboost-based detector that is robust to the variability in the different vehicle types (car, van, truck) and lighting conditions. In addition, we propose a new method to estimate the most likely three-dimensional locations of vehicles on the road ahead. With regards to the lane-markings estimation component, we have two main contributions. First, we employ a different image feature to the other commonly used edges: we use ridges, which are better suited to this problem. Second, we adapt RANSAC, a generic robust estimation method, to fit a parametric model of a pair of lane markings to the image features. We qualitatively assess our vehicle detection system in sequences captured on several road types and under very different lighting conditions. The processed videos are available on a web page associated with this paper. A quantitative evaluation of the system has shown quite accurate results (a low number of false positives and negatives) at a reasonable computation time.
Address
Corporate Author Thesis
Publisher Place of Publication Editor (up)
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area Expedition Conference
Notes ADAS Approved no
Call Number ADAS @ adas @ PSL2011 Serial 1413
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Author Jose Manuel Alvarez; Antonio Lopez
Title Road Detection Based on Illuminant Invariance Type Journal Article
Year 2011 Publication IEEE Transactions on Intelligent Transportation Systems Abbreviated Journal TITS
Volume 12 Issue 1 Pages 184-193
Keywords road detection
Abstract By using an onboard camera, it is possible to detect the free road surface ahead of the ego-vehicle. Road detection is of high relevance for autonomous driving, road departure warning, and supporting driver-assistance systems such as vehicle and pedestrian detection. The key for vision-based road detection is the ability to classify image pixels as belonging or not to the road surface. Identifying road pixels is a major challenge due to the intraclass variability caused by lighting conditions. A particularly difficult scenario appears when the road surface has both shadowed and nonshadowed areas. Accordingly, we propose a novel approach to vision-based road detection that is robust to shadows. The novelty of our approach relies on using a shadow-invariant feature space combined with a model-based classifier. The model is built online to improve the adaptability of the algorithm to the current lighting and the presence of other vehicles in the scene. The proposed algorithm works in still images and does not depend on either road shape or temporal restrictions. Quantitative and qualitative experiments on real-world road sequences with heavy traffic and shadows show that the method is robust to shadows and lighting variations. Moreover, the proposed method provides the highest performance when compared with hue-saturation-intensity (HSI)-based algorithms.
Address
Corporate Author Thesis
Publisher Place of Publication Editor (up)
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area Expedition Conference
Notes ADAS Approved no
Call Number ADAS @ adas @ AlL2011 Serial 1456
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Author Debora Gil; Aura Hernandez-Sabate; Mireia Brunat;Steven Jansen; Jordi Martinez-Vilalta
Title Structure-preserving smoothing of biomedical images Type Journal Article
Year 2011 Publication Pattern Recognition Abbreviated Journal PR
Volume 44 Issue 9 Pages 1842-1851
Keywords Non-linear smoothing; Differential geometry; Anatomical structures; segmentation; Cardiac magnetic resonance; Computerized tomography
Abstract Smoothing of biomedical images should preserve gray-level transitions between adjacent tissues, while restoring contours consistent with anatomical structures. Anisotropic diffusion operators are based on image appearance discontinuities (either local or contextual) and might fail at weak inter-tissue transitions. Meanwhile, the output of block-wise and morphological operations is prone to present a block structure due to the shape and size of the considered pixel neighborhood. In this contribution, we use differential geometry concepts to define a diffusion operator that restricts to image consistent level-sets. In this manner, the final state is a non-uniform intensity image presenting homogeneous inter-tissue transitions along anatomical structures, while smoothing intra-structure texture. Experiments on different types of medical images (magnetic resonance, computerized tomography) illustrate its benefit on a further process (such as segmentation) of images.
Address
Corporate Author Thesis
Publisher Place of Publication Editor (up)
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 0031-3203 ISBN Medium
Area Expedition Conference
Notes IAM; ADAS Approved no
Call Number IAM @ iam @ GHB2011 Serial 1526
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Author Aura Hernandez-Sabate; Debora Gil; Jaume Garcia; Enric Marti
Title Image-based Cardiac Phase Retrieval in Intravascular Ultrasound Sequences Type Journal Article
Year 2011 Publication IEEE Transactions on Ultrasonics, Ferroelectrics and Frequency Control Abbreviated Journal T-UFFC
Volume 58 Issue 1 Pages 60-72
Keywords 3-D exploring; ECG; band-pass filter; cardiac motion; cardiac phase retrieval; coronary arteries; electrocardiogram signal; image intensity local mean evolution; image-based cardiac phase retrieval; in vivo pullbacks acquisition; intravascular ultrasound sequences; longitudinal motion; signal extrema; time 36 ms; band-pass filters; biomedical ultrasonics; cardiovascular system; electrocardiography; image motion analysis; image retrieval; image sequences; medical image processing; ultrasonic imaging
Abstract Longitudinal motion during in vivo pullbacks acquisition of intravascular ultrasound (IVUS) sequences is a major artifact for 3-D exploring of coronary arteries. Most current techniques are based on the electrocardiogram (ECG) signal to obtain a gated pullback without longitudinal motion by using specific hardware or the ECG signal itself. We present an image-based approach for cardiac phase retrieval from coronary IVUS sequences without an ECG signal. A signal reflecting cardiac motion is computed by exploring the image intensity local mean evolution. The signal is filtered by a band-pass filter centered at the main cardiac frequency. Phase is retrieved by computing signal extrema. The average frame processing time using our setup is 36 ms. Comparison to manually sampled sequences encourages a deeper study comparing them to ECG signals.
Address
Corporate Author Thesis
Publisher Place of Publication Editor (up)
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 0885-3010 ISBN Medium
Area Expedition Conference
Notes IAM;ADAS Approved no
Call Number IAM @ iam @ HGG2011 Serial 1546
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Author Enric Marti; Ferran Poveda; Antoni Gurgui; Debora Gil
Title Aprendizaje Basado en Proyectos en Ingeniería Informática. Resultados y reflexiones de seis años de experiencia Type Miscellaneous
Year 2011 Publication Actas del Simposio-Taller JENUI 2011 Abbreviated Journal
Volume Issue Pages 1-8
Keywords
Abstract In this workshop a 6 years experience in Project Based Learning (PBL) in Computer Graphics, Computer Engineering course at the Autonomous University of Barcelona (UAB) is presented. We use a Moodle environment suited to manage the documentation generated in PBL. The course is organized by means of two alternative routes: a classic itinerary of lectures and test-based evaluation and another with PBL. In the PBL itinerary we explain the organization in teamgroups, homework tutoring and monitoring and evaluation guidelines for students. We provide some of the work done by students, and the results of assessment surveys carried out to students during these years. We report the evolution of our PBL itinerary in terms of, both, organization and student surveys.
The workshop aims at discussing about on the advantages and disadvantages of using these active methodologies in technical degrees such as computer engineering, in order to debate about the most suitable way of organizing PBL and assessing students learning rate.
Address Sevilla, Spain
Corporate Author Thesis
Publisher Place of Publication Editor (up)
Language spanish Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN 978-84-694-5440-4 Medium
Area Expedition Conference JENUI
Notes IAM Approved no
Call Number IAM @ iam @ MPG2011 Serial 1584
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Author David Roche; Debora Gil; Jesus Giraldo
Title An inference model for analyzing termination conditions of Evolutionary Algorithms Type Conference Article
Year 2011 Publication 14th Congrès Català en Intel·ligencia Artificial Abbreviated Journal
Volume Issue Pages 216-225
Keywords Evolutionary Computation Convergence, Termination Conditions, Statistical Inference
Abstract In real-world problems, it is mandatory to design a termination condition for Evolutionary Algorithms (EAs) ensuring stabilization close to the unknown optimum. Distribution-based quantities are good candidates as far as suitable parameters are used. A main limitation for application to real-world problems is that such parameters strongly depend on the topology of the objective function, as well as, the EA paradigm used.
We claim that the termination problem would be fully solved if we had a model measuring to what extent a distribution-based quantity asymptotically behaves like the solution accuracy. We present a regression-prediction model that relates any two given quantities and reports if they can be statistically swapped as termination conditions. Our framework is applied to two issues. First, exploring if the parameters involved in the computation of distribution-based quantities influence their asymptotic behavior. Second, to what extent existing distribution-based quantities can be asymptotically exchanged for the accuracy of the EA solution.
Address Lleida, Catalonia (Spain)
Corporate Author Associació Catalana Intel·ligència Artificial Thesis
Publisher Place of Publication Editor (up)
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN 978-1-60750-841-0 Medium
Area Expedition Conference CCIA
Notes IAM Approved no
Call Number IAM @ iam @ RGG2011a Serial 1677
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Author David Roche; Debora Gil; Jesus Giraldo
Title Using statistical inference for designing termination conditions ensuring convergence of Evolutionary Algorithms Type Conference Article
Year 2011 Publication 11th European Conference on Artificial Life Abbreviated Journal
Volume Issue Pages
Keywords
Abstract A main challenge in Evolutionary Algorithms (EAs) is determining a termination condition ensuring stabilization close to the optimum in real-world applications. Although for known test functions distribution-based quantities are good candidates (as far as suitable parameters are used), in real-world problems an open question still remains unsolved. How can we estimate an upper-bound for the termination condition value ensuring a given accuracy for the (unknown) EA solution?
We claim that the termination problem would be fully solved if we defined a quantity (depending only on the EA output) behaving like the solution accuracy. The open question would be, then, satisfactorily answered if we had a model relating both quantities, since accuracy could be predicted from the alternative quantity. We present a statistical inference framework addressing two topics: checking the correlation between the two quantities and defining a regression model for predicting (at a given confidence level) accuracy values from the EA output.
Address Paris, France
Corporate Author Thesis
Publisher Place of Publication Editor (up)
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area Expedition Conference ECAL
Notes IAM; Approved no
Call Number IAM @ iam @ RGG2011b Serial 1678
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Author Ferran Poveda; Debora Gil ;Albert Andaluz ;Enric Marti
Title Multiscale Tractography for Representing Heart Muscular Architecture Type Conference Article
Year 2011 Publication In MICCAI 2011 Workshop on Computational Diffusion MRI Abbreviated Journal
Volume Issue Pages
Keywords
Abstract Deep understanding of myocardial structure of the heart would unravel crucial knowledge for clinical and medical procedures. Although the muscular architecture of the heart has been debated by countless researchers, the controversy is still alive. Diffusion Tensor MRI, DT-MRI, is a unique imaging technique for computational validation of the muscular structure of the heart. By the complex arrangement of myocites, existing techniques can not provide comprehensive descriptions of the global muscular architecture. In this paper we introduce a multiresolution reconstruction technique based on DT-MRI streamlining for simplified global myocardial model generation. Our reconstructions can restore the most complex myocardial structures and indicate a global helical organization
Address
Corporate Author Thesis
Publisher Place of Publication Editor (up)
Language English Summary Language english Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area Expedition Conference CDRMI
Notes IAM Approved no
Call Number IAM @ iam @ PGA2011 Serial 1681
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Author Patricia Marquez; Debora Gil; Aura Hernandez-Sabate
Title A Confidence Measure for Assessing Optical Flow Accuracy in the Absence of Ground Truth Type Conference Article
Year 2011 Publication IEEE International Conference on Computer Vision – Workshops Abbreviated Journal
Volume Issue Pages 2042-2049
Keywords IEEE International Conference on Computer Vision – Workshops
Abstract Optical flow is a valuable tool for motion analysis in autonomous navigation systems. A reliable application requires determining the accuracy of the computed optical flow. This is a main challenge given the absence of ground truth in real world sequences. This paper introduces a measure of optical flow accuracy for Lucas-Kanade based flows in terms of the numerical stability of the data-term. We call this measure optical flow condition number. A statistical analysis over ground-truth data show a good statistical correlation between the condition number and optical flow error. Experiments on driving sequences illustrate its potential for autonomous navigation systems.
Address
Corporate Author Thesis
Publisher IEEE Place of Publication Barcelona (Spain) Editor (up)
Language English Summary Language English Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area Expedition Conference ICCVW
Notes IAM; ADAS Approved no
Call Number IAM @ iam @ MGH2011 Serial 1682
Permanent link to this record
 
 
Author David Vazquez; Antonio Lopez; Daniel Ponsa; Javier Marin
Title Virtual Worlds and Active Learning for Human Detection Type Conference Article
Year 2011 Publication 13th International Conference on Multimodal Interaction Abbreviated Journal
Volume Issue Pages 393-400
Keywords Pedestrian Detection; Human detection; Virtual; Domain Adaptation; Active Learning
Abstract Image based human detection is of paramount interest due to its potential applications in fields such as advanced driving assistance, surveillance and media analysis. However, even detecting non-occluded standing humans remains a challenge of intensive research. The most promising human detectors rely on classifiers developed in the discriminative paradigm, i.e., trained with labelled samples. However, labeling is a manual intensive step, especially in cases like human detection where it is necessary to provide at least bounding boxes framing the humans for training. To overcome such problem, some authors have proposed the use of a virtual world where the labels of the different objects are obtained automatically. This means that the human models (classifiers) are learnt using the appearance of rendered images, i.e., using realistic computer graphics. Later, these models are used for human detection in images of the real world. The results of this technique are surprisingly good. However, these are not always as good as the classical approach of training and testing with data coming from the same camera, or similar ones. Accordingly, in this paper we address the challenge of using a virtual world for gathering (while playing a videogame) a large amount of automatically labelled samples (virtual humans and background) and then training a classifier that performs equal, in real-world images, than the one obtained by equally training from manually labelled real-world samples. For doing that, we cast the problem as one of domain adaptation. In doing so, we assume that a small amount of manually labelled samples from real-world images is required. To collect these labelled samples we propose a non-standard active learning technique. Therefore, ultimately our human model is learnt by the combination of virtual and real world labelled samples (Fig. 1), which has not been done before. We present quantitative results showing that this approach is valid.
Address Alicante, Spain
Corporate Author Thesis
Publisher ACM DL Place of Publication New York, NY, USA, USA Editor (up)
Language English Summary Language English Original Title Virtual Worlds and Active Learning for Human Detection
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN 978-1-4503-0641-6 Medium
Area Expedition Conference ICMI
Notes ADAS Approved yes
Call Number ADAS @ adas @ VLP2011a Serial 1683
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Author Jorge Bernal; F. Javier Sanchez; Fernando Vilariño
Title Integration of Valley Orientation Distribution for Polyp Region Identification in Colonoscopy Type Conference Article
Year 2011 Publication In MICCAI 2011 Workshop on Computational and Clinical Applications in Abdominal Imaging Abbreviated Journal
Volume 6668 Issue Pages 76-83
Keywords
Abstract This work presents a region descriptor based on the integration of the information that the depth of valleys image provides. The depth of valleys image is based on the presence of intensity valleys around polyps due to the image acquisition. Our proposed method consists of defining, for each point, a series of radial sectors around it and then accumulates the maxima of the depth of valleys image only if the orientation of the intensity valley coincides with the orientation of the sector above. We apply our descriptor to a prior segmentation of the images and we present promising results on polyp detection, outperforming other approaches that also integrate depth of valleys information.
Address Toronto, Canada
Corporate Author Thesis
Publisher Springer Link Place of Publication Editor (up)
Language Summary Language Original Title
Series Editor Series Title Lecture Notes in Computer Science Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area 800 Expedition Conference ABI
Notes MV;SIAI Approved no
Call Number IAM @ iam @ BSV2011d Serial 1698
Permanent link to this record
 
 
Author Jorge Bernal; F. Javier Sanchez; Fernando Vilariño
Title Depth of Valleys Accumulation Algorithm for Object Detection Type Conference Article
Year 2011 Publication 14th Congrès Català en Intel·ligencia Artificial Abbreviated Journal
Volume 1 Issue 1 Pages 71-80
Keywords Object Recognition, Object Region Identification, Image Analysis, Image Processing
Abstract This work aims at detecting in which regions the objects in the image are by using information about the intensity of valleys, which appear to surround ob- jects in images where the source of light is in the line of direction than the camera. We present our depth of valleys accumulation method, which consists of two stages: first, the definition of the depth of valleys image which combines the output of a ridges and valleys detector with the morphological gradient to measure how deep is a point inside a valley and second, an algorithm that denotes points of the image as interior to objects those which are inside complete or incomplete boundaries in the depth of valleys image. To evaluate the performance of our method we have tested it on several application domains. Our results on object region identification are promising, specially in the field of polyp detection in colonoscopy videos, and we also show its applicability in different areas.
Address Lleida
Corporate Author Thesis
Publisher Place of Publication Editor (up)
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN 978-1-60750-841-0 Medium
Area 800 Expedition Conference CCIA
Notes MV;SIAI Approved no
Call Number IAM @ iam @ BSV2011b Serial 1699
Permanent link to this record
 
 
Author Panagiota Spyridonos; Fernando Vilariño; Jordi Vitria; Petia Radeva; Fernando Azpiroz; Juan Malagelada
Title Device, system and method for automatic detection of contractile activity in an image frame Type Patent
Year 2011 Publication US 2011/0044515 A1 Abbreviated Journal
Volume Issue Pages
Keywords
Abstract A device, system and method for automatic detection of contractile activity of a body lumen in an image frame is provided, wherein image frames during contractile activity are captured and/or image frames including contractile activity are automatically detected, such as through pattern recognition and/or feature extraction to trace image frames including contractions, e.g., with wrinkle patterns. A manual procedure of annotation of contractions, e.g. tonic contractions in capsule endoscopy, may consist of the visualization of the whole video by a specialist, and the labeling of the contraction frames. Embodiments of the present invention may be suitable for implementation in an in vivo imaging system.
Address Pearl Cohen Zedek Latzer, LLP, 1500 Broadway 12th Floor, New York (NY) 10036 (US)
Corporate Author US Patent Office Thesis
Publisher Place of Publication Editor (up)
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area Expedition Conference
Notes MV;OR;MILAB;SIAI Approved no
Call Number IAM @ iam @ SVV2011 Serial 1701
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Author Gerard Lacey; Fernando Vilariño
Title Endoscopy system with motion sensors Type Patent
Year 2011 Publication US 2011/0032347 A1 Abbreviated Journal
Volume Issue Pages
Keywords
Abstract An endoscopy system (1) comprises an endoscope (2) with a camera (3) at its tip. The endoscope extends through an endoscope guide (4) for guiding movement of the endoscope and for measurement of its movement as it enters the body. The guide (4) comprises a generally conical body (5) having a through passage (105) through which the endoscope (2) extends. A motion sensor comprises an optical transmitter (7) and a detector (8) mounted alongside the passage (105) to measure the insertion-withdrawal linear motion and also rotation of the endoscope by the endoscopist's hand. The system (1) also comprises a flexure controller (10) having wheels operated by the endoscopist. The camera (3), the motion sensor (7/8), and the flexure controller (10) are all connected to a processor (11) which feeds a display.
Address Jacobson Holman PPLC; 400 Seventh Street, N.W. Suite 600; Whashington DC 20004 DC
Corporate Author USPTO Thesis
Publisher Place of Publication Editor (up)
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area 800 Expedition Conference
Notes MV;SIAI Approved no
Call Number IAM @ iam @ LaV2011 Serial 1703
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