Sumit K. Banchhor, Narendra D. Londhe, Tadashi Araki, Luca Saba, Petia Radeva, Narendra N. Khanna, et al. (2018). Calcium detection, its quantification, and grayscale morphology-based risk stratification using machine learning in multimodality big data coronary and carotid scans: A review. CBM - Computers in Biology and Medicine, 101, 184–198.
Abstract: Purpose of review
Atherosclerosis is the leading cause of cardiovascular disease (CVD) and stroke. Typically, atherosclerotic calcium is found during the mature stage of the atherosclerosis disease. It is therefore often a challenge to identify and quantify the calcium. This is due to the presence of multiple components of plaque buildup in the arterial walls. The American College of Cardiology/American Heart Association guidelines point to the importance of calcium in the coronary and carotid arteries and further recommend its quantification for the prevention of heart disease. It is therefore essential to stratify the CVD risk of the patient into low- and high-risk bins.
Recent finding
Calcium formation in the artery walls is multifocal in nature with sizes at the micrometer level. Thus, its detection requires high-resolution imaging. Clinical experience has shown that even though optical coherence tomography offers better resolution, intravascular ultrasound still remains an important imaging modality for coronary wall imaging. For a computer-based analysis system to be complete, it must be scientifically and clinically validated. This study presents a state-of-the-art review (condensation of 152 publications after examining 200 articles) covering the methods for calcium detection and its quantification for coronary and carotid arteries, the pros and cons of these methods, and the risk stratification strategies. The review also presents different kinds of statistical models and gold standard solutions for the evaluation of software systems useful for calcium detection and quantification. Finally, the review concludes with a possible vision for designing the next-generation system for better clinical outcomes.
Keywords: Heart disease; Stroke; Atherosclerosis; Intravascular; Coronary; Carotid; Calcium; Morphology; Risk stratification
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Fernando Barrera, Felipe Lumbreras, Cristhian Aguilera, & Angel Sappa. (2012). Planar-Based Multispectral Stereo. In 11th Quantitative InfraRed Thermography.
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Dena Bazazian, Dimosthenis Karatzas, & Andrew Bagdanov. (2018). Soft-PHOC Descriptor for End-to-End Word Spotting in Egocentric Scene Images. In International Workshop on Egocentric Perception, Interaction and Computing at ECCV.
Abstract: Word spotting in natural scene images has many applications in scene understanding and visual assistance. We propose Soft-PHOC, an intermediate representation of images based on character probability maps. Our representation extends the concept of the Pyramidal Histogram Of Characters (PHOC) by exploiting Fully Convolutional Networks to derive a pixel-wise mapping of the character distribution within candidate word regions. We show how to use our descriptors for word spotting tasks in egocentric camera streams through an efficient text line proposal algorithm. This is based on the Hough Transform over character attribute maps followed by scoring using Dynamic Time Warping (DTW). We evaluate our results on ICDAR 2015 Challenge 4 dataset of incidental scene text captured by an egocentric camera.
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Ali Furkan Biten. (2022). A Bitter-Sweet Symphony on Vision and Language: Bias and World Knowledge (Dimosthenis Karatzas, & Lluis Gomez, Eds.). Ph.D. thesis, IMPRIMA, .
Abstract: Vision and Language are broadly regarded as cornerstones of intelligence. Even though language and vision have different aims – language having the purpose of communication, transmission of information and vision having the purpose of constructing mental representations around us to navigate and interact with objects – they cooperate and depend on one another in many tasks we perform effortlessly. This reliance is actively being studied in various Computer Vision tasks, e.g. image captioning, visual question answering, image-sentence retrieval, phrase grounding, just to name a few. All of these tasks share the inherent difficulty of the aligning the two modalities, while being robust to language
priors and various biases existing in the datasets. One of the ultimate goal for vision and language research is to be able to inject world knowledge while getting rid of the biases that come with the datasets. In this thesis, we mainly focus on two vision and language tasks, namely Image Captioning and Scene-Text Visual Question Answering (STVQA).
In both domains, we start by defining a new task that requires the utilization of world knowledge and in both tasks, we find that the models commonly employed are prone to biases that exist in the data. Concretely, we introduce new tasks and discover several problems that impede performance at each level and provide remedies or possible solutions in each chapter: i) We define a new task to move beyond Image Captioning to Image Interpretation that can utilize Named Entities in the form of world knowledge. ii) We study the object hallucination problem in classic Image Captioning systems and develop an architecture-agnostic solution. iii) We define a sub-task of Visual Question Answering that requires reading the text in the image (STVQA), where we highlight the limitations of current models. iv) We propose an architecture for the STVQA task that can point to the answer in the image and show how to combine it with classic VQA models. v) We show how far language can get us in STVQA and discover yet another bias which causes the models to disregard the image while doing Visual Question Answering.
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Marco Bellantonio, Mohammad A. Haque, Pau Rodriguez, Kamal Nasrollahi, Taisi Telve, Sergio Escalera, et al. (2016). Spatio-Temporal Pain Recognition in CNN-based Super-Resolved Facial Images. In 23rd International Conference on Pattern Recognition (Vol. 10165). LNCS.
Abstract: Automatic pain detection is a long expected solution to a prevalent medical problem of pain management. This is more relevant when the subject of pain is young children or patients with limited ability to communicate about their pain experience. Computer vision-based analysis of facial pain expression provides a way of efficient pain detection. When deep machine learning methods came into the scene, automatic pain detection exhibited even better performance. In this paper, we figured out three important factors to exploit in automatic pain detection: spatial information available regarding to pain in each of the facial video frames, temporal axis information regarding to pain expression pattern in a subject video sequence, and variation of face resolution. We employed a combination of convolutional neural network and recurrent neural network to setup a deep hybrid pain detection framework that is able to exploit both spatial and temporal pain information from facial video. In order to analyze the effect of different facial resolutions, we introduce a super-resolution algorithm to generate facial video frames with different resolution setups. We investigated the performance on the publicly available UNBC-McMaster Shoulder Pain database. As a contribution, the paper provides novel and important information regarding to the performance of a hybrid deep learning framework for pain detection in facial images of different resolution.
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Miguel Angel Bautista, Antonio Hernandez, Victor Ponce, Xavier Perez Sala, Xavier Baro, Oriol Pujol, et al. (2012). Probability-based Dynamic TimeWarping for Gesture Recognition on RGB-D data. In 21st International Conference on Pattern Recognition International Workshop on Depth Image Analysis (Vol. 7854, pp. 126–135). Springer Berlin Heidelberg.
Abstract: Dynamic Time Warping (DTW) is commonly used in gesture recognition tasks in order to tackle the temporal length variability of gestures. In the DTW framework, a set of gesture patterns are compared one by one to a maybe infinite test sequence, and a query gesture category is recognized if a warping cost below a certain threshold is found within the test sequence. Nevertheless, either taking one single sample per gesture category or a set of isolated samples may not encode the variability of such gesture category. In this paper, a probability-based DTW for gesture recognition is proposed. Different samples of the same gesture pattern obtained from RGB-Depth data are used to build a Gaussian-based probabilistic model of the gesture. Finally, the cost of DTW has been adapted accordingly to the new model. The proposed approach is tested in a challenging scenario, showing better performance of the probability-based DTW in comparison to state-of-the-art approaches for gesture recognition on RGB-D data.
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Jorge Bernal, Aymeric Histace, Marc Masana, Quentin Angermann, Cristina Sanchez Montes, Cristina Rodriguez de Miguel, et al. (2019). GTCreator: a flexible annotation tool for image-based datasets. IJCAR - International Journal of Computer Assisted Radiology and Surgery, 14(2), 191–201.
Abstract: Abstract Purpose: Methodology evaluation for decision support systems for health is a time consuming-task. To assess performance of polyp detection
methods in colonoscopy videos, clinicians have to deal with the annotation
of thousands of images. Current existing tools could be improved in terms of
exibility and ease of use. Methods:We introduce GTCreator, a exible annotation tool for providing image and text annotations to image-based datasets.
It keeps the main basic functionalities of other similar tools while extending
other capabilities such as allowing multiple annotators to work simultaneously
on the same task or enhanced dataset browsing and easy annotation transfer aiming to speed up annotation processes in large datasets. Results: The
comparison with other similar tools shows that GTCreator allows to obtain
fast and precise annotation of image datasets, being the only one which offers
full annotation editing and browsing capabilites. Conclusions: Our proposed
annotation tool has been proven to be efficient for large image dataset annota-
tion, as well as showing potential of use in other stages of method evaluation
such as experimental setup or results analysis.
Keywords: Annotation tool; Validation Framework; Benchmark; Colonoscopy; Evaluation
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Jorge Bernal, Aymeric Histace, Marc Masana, Quentin Angermann, Cristina Sanchez Montes, Cristina Rodriguez de Miguel, et al. (2018). Polyp Detection Benchmark in Colonoscopy Videos using GTCreator: A Novel Fully Configurable Tool for Easy and Fast Annotation of Image Databases. In 32nd International Congress and Exhibition on Computer Assisted Radiology & Surgery.
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Mohammad Ali Bagheri, Gang Hu, Qigang Gao, & Sergio Escalera. (2014). A Framework of Multi-Classifier Fusion for Human Action Recognition. In 22nd International Conference on Pattern Recognition (pp. 1260–1265).
Abstract: The performance of different action-recognition methods using skeleton joint locations have been recently studied by several computer vision researchers. However, the potential improvement in classification through classifier fusion by ensemble-based methods has remained unattended. In this work, we evaluate the performance of an ensemble of five action learning techniques, each performing the recognition task from a different perspective. The underlying rationale of the fusion approach is that different learners employ varying structures of input descriptors/features to be trained. These varying structures cannot be attached and used by a single learner. In addition, combining the outputs of several learners can reduce the risk of an unfortunate selection of a poorly performing learner. This leads to having a more robust and general-applicable framework. Also, we propose two simple, yet effective, action description techniques. In order to improve the recognition performance, a powerful combination strategy is utilized based on the Dempster-Shafer theory, which can effectively make use of diversity of base learners trained on different sources of information. The recognition results of the individual classifiers are compared with those obtained from fusing the classifiers' output, showing advanced performance of the proposed methodology.
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Miguel Angel Bautista, Antonio Hernandez, Sergio Escalera, Laura Igual, Oriol Pujol, Josep Moya, et al. (2016). A Gesture Recognition System for Detecting Behavioral Patterns of ADHD. TSMCB - IEEE Transactions on System, Man and Cybernetics, Part B, 46(1), 136–147.
Abstract: We present an application of gesture recognition using an extension of Dynamic Time Warping (DTW) to recognize behavioural patterns of Attention Deficit Hyperactivity Disorder (ADHD). We propose an extension of DTW using one-class classifiers in order to be able to encode the variability of a gesture category, and thus, perform an alignment between a gesture sample and a gesture class. We model the set of gesture samples of a certain gesture category using either GMMs or an approximation of Convex Hulls. Thus, we add a theoretical contribution to classical warping path in DTW by including local modeling of intra-class gesture variability. This methodology is applied in a clinical context, detecting a group of ADHD behavioural patterns defined by experts in psychology/psychiatry, to provide support to clinicians in the diagnose procedure. The proposed methodology is tested on a novel multi-modal dataset (RGB plus Depth) of ADHD children recordings with behavioural patterns. We obtain satisfying results when compared to standard state-of-the-art approaches in the DTW context.
Keywords: Gesture Recognition; ADHD; Gaussian Mixture Models; Convex Hulls; Dynamic Time Warping; Multi-modal RGB-Depth data
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Xavier Boix, Josep M. Gonfaus, Joost Van de Weijer, Andrew Bagdanov, Joan Serrat, & Jordi Gonzalez. (2012). Harmony Potentials: Fusing Global and Local Scale for Semantic Image Segmentation. IJCV - International Journal of Computer Vision, 96(1), 83–102.
Abstract: The Hierarchical Conditional Random Field(HCRF) model have been successfully applied to a number of image labeling problems, including image segmentation. However, existing HCRF models of image segmentation do not allow multiple classes to be assigned to a single region, which limits their ability to incorporate contextual information across multiple scales.
At higher scales in the image, this representation yields an oversimpli ed model since multiple classes can be reasonably expected to appear within large regions. This simpli ed model particularly limits the impact of information at higher scales. Since class-label information at these scales is usually more reliable than at lower, noisier scales, neglecting this information is undesirable. To
address these issues, we propose a new consistency potential for image labeling problems, which we call the harmony potential. It can encode any possible combi-
nation of labels, penalizing only unlikely combinations of classes. We also propose an e ective sampling strategy over this expanded label set that renders tractable the underlying optimization problem. Our approach obtains state-of-the-art results on two challenging, standard benchmark datasets for semantic image segmentation: PASCAL VOC 2010, and MSRC-21.
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Sonia Baeza, Debora Gil, Carles Sanchez, Guillermo Torres, Ignasi Garcia Olive, Ignasi Guasch, et al. (2023). Biopsia virtual radiomica para el diagnóstico histológico de nódulos pulmonares – Resultados intermedios del proyecto Radiolung. In SEPAR.
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Jorge Bernal, Debora Gil, Carles Sanchez, & F. Javier Sanchez. (2014). Discarding Non Informative Regions for Efficient Colonoscopy Image Analysis. In 1st MICCAI Workshop on Computer-Assisted and Robotic Endoscopy (Vol. 8899, pp. 1–10). LNCS. Springer International Publishing.
Abstract: In this paper we present a novel polyp region segmentation method for colonoscopy videos. Our method uses valley information associated to polyp boundaries in order to provide an initial segmentation. This first segmentation is refined to eliminate boundary discontinuities caused by image artifacts or other elements of the scene. Experimental results over a publicly annotated database show that our method outperforms both general and specific segmentation methods by providing more accurate regions rich in polyp content. We also prove how image preprocessing is needed to improve final polyp region segmentation.
Keywords: Image Segmentation; Polyps, Colonoscopy; Valley Information; Energy Maps
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Ali Furkan Biten, Lluis Gomez, Marçal Rusiñol, & Dimosthenis Karatzas. (2019). Good News, Everyone! Context driven entity-aware captioning for news images. In 32nd IEEE Conference on Computer Vision and Pattern Recognition (pp. 12458–12467).
Abstract: Current image captioning systems perform at a merely descriptive level, essentially enumerating the objects in the scene and their relations. Humans, on the contrary, interpret images by integrating several sources of prior knowledge of the world. In this work, we aim to take a step closer to producing captions that offer a plausible interpretation of the scene, by integrating such contextual information into the captioning pipeline. For this we focus on the captioning of images used to illustrate news articles. We propose a novel captioning method that is able to leverage contextual information provided by the text of news articles associated with an image. Our model is able to selectively draw information from the article guided by visual cues, and to dynamically extend the output dictionary to out-of-vocabulary named entities that appear in the context source. Furthermore we introduce“ GoodNews”, the largest news image captioning dataset in the literature and demonstrate state-of-the-art results.
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Marc Bolaños, Maite Garolera, & Petia Radeva. (2015). Object Discovery using CNN Features in Egocentric Videos. In Pattern Recognition and Image Analysis, Proceedings of 7th Iberian Conference , ibPRIA 2015 (Vol. 9117, pp. 67–74). LNCS.
Abstract: Lifelogging devices based on photo/video are spreading faster everyday. This growth can represent great benefits to develop methods for extraction of meaningful information about the user wearing the device and his/her environment. In this paper, we propose a semi-supervised strategy for easily discovering objects relevant to the person wearing a first-person camera. The egocentric video sequence acquired by the camera, uses both the appearance extracted by means of a deep convolutional neural network and an object refill methodology that allow to discover objects even in case of small amount of object appearance in the collection of images. We validate our method on a sequence of 1000 egocentric daily images and obtain results with an F-measure of 0.5, 0.17 better than the state of the art approach.
Keywords: Object discovery; Egocentric videos; Lifelogging; CNN
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