Pau Cano, Alvaro Caravaca, Debora Gil, & Eva Musulen. (2023). Diagnosis of Helicobacter pylori using AutoEncoders for the Detection of Anomalous Staining Patterns in Immunohistochemistry Images.
Abstract: This work addresses the detection of Helicobacter pylori a bacterium classified since 1994 as class 1 carcinogen to humans. By its highest specificity and sensitivity, the preferred diagnosis technique is the analysis of histological images with immunohistochemical staining, a process in which certain stained antibodies bind to antigens of the biological element of interest. This analysis is a time demanding task, which is currently done by an expert pathologist that visually inspects the digitized samples.
We propose to use autoencoders to learn latent patterns of healthy tissue and detect H. pylori as an anomaly in image staining. Unlike existing classification approaches, an autoencoder is able to learn patterns in an unsupervised manner (without the need of image annotations) with high performance. In particular, our model has an overall 91% of accuracy with 86\% sensitivity, 96% specificity and 0.97 AUC in the detection of H. pylori.
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Alvaro Cepero, Albert Clapes, & Sergio Escalera. (2015). Automatic non-verbal communication skills analysis: a quantitative evaluation. AIC - AI Communications, 28(1), 87–101.
Abstract: The oral communication competence is defined on the top of the most relevant skills for one's professional and personal life. Because of the importance of communication in our activities of daily living, it is crucial to study methods to evaluate and provide the necessary feedback that can be used in order to improve these communication capabilities and, therefore, learn how to express ourselves better. In this work, we propose a system capable of evaluating quantitatively the quality of oral presentations in an automatic fashion. The system is based on a multi-modal RGB, depth, and audio data description and a fusion approach in order to recognize behavioral cues and train classifiers able to eventually predict communication quality levels. The performance of the proposed system is tested on a novel dataset containing Bachelor thesis' real defenses, presentations from an 8th semester Bachelor courses, and Master courses' presentations at Universitat de Barcelona. Using as groundtruth the marks assigned by actual instructors, our system achieves high performance categorizing and ranking presentations by their quality, and also making real-valued mark predictions.
Keywords: Social signal processing; human behavior analysis; multi-modal data description; multi-modal data fusion; non-verbal communication analysis; e-Learning
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Alvaro Cepero, Albert Clapes, & Sergio Escalera. (2013). Quantitative analysis of non-verbal communication for competence analysis. In 16th Catalan Conference on Artificial Intelligence (Vol. 256, pp. 105–114).
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Dustin Carrion Ojeda, Hong Chen, Adrian El Baz, Sergio Escalera, Chaoyu Guan, Isabelle Guyon, et al. (2022). NeurIPS’22 Cross-Domain MetaDL competition: Design and baseline results. In Understanding Social Behavior in Dyadic and Small Group Interactions (Vol. 191, pp. 24–37).
Abstract: We present the design and baseline results for a new challenge in the ChaLearn meta-learning series, accepted at NeurIPS'22, focusing on “cross-domain” meta-learning. Meta-learning aims to leverage experience gained from previous tasks to solve new tasks efficiently (i.e., with better performance, little training data, and/or modest computational resources). While previous challenges in the series focused on within-domain few-shot learning problems, with the aim of learning efficiently N-way k-shot tasks (i.e., N class classification problems with k training examples), this competition challenges the participants to solve “any-way” and “any-shot” problems drawn from various domains (healthcare, ecology, biology, manufacturing, and others), chosen for their humanitarian and societal impact. To that end, we created Meta-Album, a meta-dataset of 40 image classification datasets from 10 domains, from which we carve out tasks with any number of “ways” (within the range 2-20) and any number of “shots” (within the range 1-20). The competition is with code submission, fully blind-tested on the CodaLab challenge platform. The code of the winners will be open-sourced, enabling the deployment of automated machine learning solutions for few-shot image classification across several domains.
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Francesco Ciompi, Simone Balocco, Juan Rigla, Xavier Carrillo, J. Mauri, & Petia Radeva. (2016). Computer-Aided Detection of Intra-Coronary Stent in Intravascular Ultrasound Sequences. MP - Medical Physics, 43(10).
Abstract: Purpose: An intraluminal coronary stent is a metal mesh tube deployed in a stenotic artery during Percutaneous Coronary Intervention (PCI), in order to prevent acute vessel occlusion. The identi cation of struts location and the de nition of the stent shape are relevant for PCI planning 15 and for patient follow-up. We present a fully-automatic framework for Computer-Aided Detection
(CAD) of intra-coronary stents in Intravascular Ultrasound (IVUS) image sequences. The CAD system is able to detect stent struts and estimate the stent shape.
Methods: The proposed CAD uses machine learning to provide a comprehensive interpretation of the local structure of the vessel by means of semantic classi cation. The output of the classi cation 20 stage is then used to detect struts and to estimate the stent shape. The proposed approach is validated using a multi-centric data-set of 1,015 images from 107 IVUS sequences containing both metallic and bio-absorbable stents.
Results: The method was able to detect structs in both metallic stents with an overall F-measure of 77.7% and a mean distance of 0.15 mm from manually annotated struts, and in bio-absorbable 25 stents with an overall F-measure of 77.4% and a mean distance of 0.09 mm from manually annotated struts.
Conclusions: The results are close to the inter-observer variability and suggest that the system has the potential of being used as method for aiding percutaneous interventions.
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Bhaskar Chakraborty, Andrew Bagdanov, Jordi Gonzalez, & Xavier Roca. (2013). Human Action Recognition Using an Ensemble of Body-Part Detectors. EXSY - Expert Systems, 30(2), 101–114.
Abstract: This paper describes an approach to human action recognition based on a probabilistic optimization model of body parts using hidden Markov model (HMM). Our method is able to distinguish between similar actions by only considering the body parts having major contribution to the actions, for example, legs for walking, jogging and running; arms for boxing, waving and clapping. We apply HMMs to model the stochastic movement of the body parts for action recognition. The HMM construction uses an ensemble of body-part detectors, followed by grouping of part detections, to perform human identification. Three example-based body-part detectors are trained to detect three components of the human body: the head, legs and arms. These detectors cope with viewpoint changes and self-occlusions through the use of ten sub-classifiers that detect body parts over a specific range of viewpoints. Each sub-classifier is a support vector machine trained on features selected for the discriminative power for each particular part/viewpoint combination. Grouping of these detections is performed using a simple geometric constraint model that yields a viewpoint-invariant human detector. We test our approach on three publicly available action datasets: the KTH dataset, Weizmann dataset and HumanEva dataset. Our results illustrate that with a simple and compact representation we can achieve robust recognition of human actions comparable to the most complex, state-of-the-art methods.
Keywords: Human action recognition;body-part detection;hidden Markov model
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P. Canals, Simone Balocco, O. Diaz, J. Li, A. Garcia Tornel, M. Olive Gadea, et al. (2023). A fully automatic method for vascular tortuosity feature extraction in the supra-aortic region: unraveling possibilities in stroke treatment planning. CMIG - Computerized Medical Imaging and Graphics, 104(102170).
Abstract: Vascular tortuosity of supra-aortic vessels is widely considered one of the main reasons for failure and delays in endovascular treatment of large vessel occlusion in patients with acute ischemic stroke. Characterization of tortuosity is a challenging task due to the lack of objective, robust and effective analysis tools. We present a fully automatic method for arterial segmentation, vessel labelling and tortuosity feature extraction applied to the supra-aortic region. A sample of 566 computed tomography angiography scans from acute ischemic stroke patients (aged 74.8 ± 12.9, 51.0% females) were used for training, validation and testing of a segmentation module based on a U-Net architecture (162 cases) and a vessel labelling module powered by a graph U-Net (566 cases). Successively, 30 cases were processed for testing of a tortuosity feature extraction module. Measurements obtained through automatic processing were compared to manual annotations from two observers for a thorough validation of the method. The proposed feature extraction method presented similar performance to the inter-rater variability observed in the measurement of 33 geometrical and morphological features of the arterial anatomy in the supra-aortic region. This system will contribute to the development of more complex models to advance the treatment of stroke by adding immediate automation, objectivity, repeatability and robustness to the vascular tortuosity characterization of patients.
Keywords: Artificial intelligence; Deep learning; Stroke; Thrombectomy; Vascular feature extraction; Vascular tortuosity
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Francesco Ciompi, Simone Balocco, Carles Caus, J. Mauri, & Petia Radeva. (2013). Stent shape estimation through a comprehensive interpretation of intravascular ultrasound images. In 16th International Conference on Medical Image Computing and Computer Assisted Intervention (Vol. 8150, pp. 345–352). LNCS. Springer Berlin Heidelberg.
Abstract: We present a method for automatic struts detection and stent shape estimation in cross-sectional intravascular ultrasound images. A stent shape is first estimated through a comprehensive interpretation of the vessel morphology, performed using a supervised context-aware multi-class classification scheme. Then, the successive strut identification exploits both local appearance and the defined stent shape. The method is tested on 589 images obtained from 80 patients, achieving a F-measure of 74.1% and an averaged distance between manual and automatic struts of 0.10 mm.
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Ozan Caglayan, Adrien Bardet, Fethi Bougares, Loic Barrault, Kai Wang, Marc Masana, et al. (2018). LIUM-CVC Submissions for WMT18 Multimodal Translation Task. In 3rd Conference on Machine Translation.
Abstract: This paper describes the multimodal Neural Machine Translation systems developed by LIUM and CVC for WMT18 Shared Task on Multimodal Translation. This year we propose several modifications to our previou multimodal attention architecture in order to better integrate convolutional features and refine them using encoder-side information. Our final constrained submissions
ranked first for English→French and second for English→German language pairs among the constrained submissions according to the automatic evaluation metric METEOR.
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Ozan Caglayan, Walid Aransa, Yaxing Wang, Marc Masana, Mercedes Garcıa-Martinez, Fethi Bougares, et al. (2016). Does Multimodality Help Human and Machine for Translation and Image Captioning? In 1st conference on machine translation.
Abstract: This paper presents the systems developed by LIUM and CVC for the WMT16 Multimodal Machine Translation challenge. We explored various comparative methods, namely phrase-based systems and attentional recurrent neural networks models trained using monomodal or multimodal data. We also performed a human evaluation in order to estimate theusefulness of multimodal data for human machine translation and image description generation. Our systems obtained the best results for both tasks according to the automatic evaluation metrics BLEU and METEOR.
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M. Cruz, Cristhian A. Aguilera-Carrasco, Boris X. Vintimilla, Ricardo Toledo, & Angel Sappa. (2015). Cross-spectral image registration and fusion: an evaluation study. In 2nd International Conference on Machine Vision and Machine Learning.
Abstract: This paper presents a preliminary study on the registration and fusion of cross-spectral imaging. The objective is to evaluate the validity of widely used computer vision approaches when they are applied at different
spectral bands. In particular, we are interested in merging images from the infrared (both long wave infrared: LWIR and near infrared: NIR) and visible spectrum (VS). Experimental results with different data sets are presented.
Keywords: multispectral imaging; image registration; data fusion; infrared and visible spectra
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Pierluigi Casale. (2011). Approximate Ensemble Methods for Physical Activity Recognition Applications (Oriol Pujol, & Petia Radeva, Eds.). Ph.D. thesis, Ediciones Graficas Rey, .
Abstract: The main interest of this thesis focuses on computational methodologies able to
reduce the degree of complexity of learning algorithms and its application to physical
activity recognition.
Random Projections will be used to reduce the computational complexity in Multiple Classifier Systems. A new boosting algorithm and a new one-class classification
methodology have been developed. In both cases, random projections are used for
reducing the dimensionality of the problem and for generating diversity, exploiting in
this way the benefits that ensembles of classifiers provide in terms of performances
and stability. Moreover, the new one-class classification methodology, based on an ensemble strategy able to approximate a multidimensional convex-hull, has been proved
to over-perform state-of-the-art one-class classification methodologies.
The practical focus of the thesis is towards Physical Activity Recognition. A new
hardware platform for wearable computing application has been developed and used
for collecting data of activities of daily living allowing to study the optimal features
set able to successful classify activities.
Based on the classification methodologies developed and the study conducted on
physical activity classification, a machine learning architecture capable to provide a
continuous authentication mechanism for mobile-devices users has been worked out,
as last part of the thesis. The system, based on a personalized classifier, states on
the analysis of the characteristic gait patterns typical of each individual ensuring an
unobtrusive and continuous authentication mechanism
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Pierluigi Casale. (2008). Social Environment Description from Data Collected with a Wearable Device.
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S. Casanovas. (2000). Seguiment de moviment articulat mitjançant flux òptic i metodes estocastics.
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Alex Caralps. (2000). Estudi de viabilitat per la inspeccio automatica de cintes elastiques amb silicona.
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