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Author (down) Jorge Bernal; F. Javier Sanchez; Fernando Vilariño
Title Depth of Valleys Accumulation Algorithm for Object Detection Type Conference Article
Year 2011 Publication 14th Congrès Català en Intel·ligencia Artificial Abbreviated Journal
Volume 1 Issue 1 Pages 71-80
Keywords Object Recognition, Object Region Identification, Image Analysis, Image Processing
Abstract This work aims at detecting in which regions the objects in the image are by using information about the intensity of valleys, which appear to surround ob- jects in images where the source of light is in the line of direction than the camera. We present our depth of valleys accumulation method, which consists of two stages: first, the definition of the depth of valleys image which combines the output of a ridges and valleys detector with the morphological gradient to measure how deep is a point inside a valley and second, an algorithm that denotes points of the image as interior to objects those which are inside complete or incomplete boundaries in the depth of valleys image. To evaluate the performance of our method we have tested it on several application domains. Our results on object region identification are promising, specially in the field of polyp detection in colonoscopy videos, and we also show its applicability in different areas.
Address Lleida
Corporate Author Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN 978-1-60750-841-0 Medium
Area 800 Expedition Conference CCIA
Notes MV;SIAI Approved no
Call Number IAM @ iam @ BSV2011b Serial 1699
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Author (down) Jorge Bernal; F. Javier Sanchez; Fernando Vilariño
Title Impact of Image Preprocessing Methods on Polyp Localization in Colonoscopy Frames Type Conference Article
Year 2013 Publication 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society Abbreviated Journal
Volume Issue Pages 7350 - 7354
Keywords
Abstract In this paper we present our image preprocessing methods as a key part of our automatic polyp localization scheme. These methods are used to assess the impact of different endoluminal scene elements when characterizing polyps. More precisely we tackle the influence of specular highlights, blood vessels and black mask surrounding the scene. Experimental results prove that the appropriate handling of these elements leads to a great improvement in polyp localization results.
Address Osaka; Japan; July 2013
Corporate Author Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 1557-170X ISBN Medium
Area 800 Expedition Conference EMBC
Notes MV; 600.047; 600.060;SIAI Approved no
Call Number Admin @ si @ BSV2013 Serial 2286
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Author (down) Jorge Bernal; F. Javier Sanchez; Fernando Vilariño
Title Towards Automatic Polyp Detection with a Polyp Appearance Model Type Journal Article
Year 2012 Publication Pattern Recognition Abbreviated Journal PR
Volume 45 Issue 9 Pages 3166-3182
Keywords Colonoscopy,PolypDetection,RegionSegmentation,SA-DOVA descriptot
Abstract This work aims at the automatic polyp detection by using a model of polyp appearance in the context of the analysis of colonoscopy videos. Our method consists of three stages: region segmentation, region description and region classification. The performance of our region segmentation method guarantees that if a polyp is present in the image, it will be exclusively and totally contained in a single region. The output of the algorithm also defines which regions can be considered as non-informative. We define as our region descriptor the novel Sector Accumulation-Depth of Valleys Accumulation (SA-DOVA), which provides a necessary but not sufficient condition for the polyp presence. Finally, we classify our segmented regions according to the maximal values of the SA-DOVA descriptor. Our preliminary classification results are promising, especially when classifying those parts of the image that do not contain a polyp inside.
Address
Corporate Author Thesis
Publisher Elsevier Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 0031-3203 ISBN Medium
Area 800 Expedition Conference IbPRIA
Notes MV;SIAI Approved no
Call Number Admin @ si @ BSV2012; IAM @ iam Serial 1997
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Author (down) Jorge Bernal
Title Use of Projection and Back-projection Methods in Bidimensional Computed Tomography Image Reconstruction Type Report
Year 2009 Publication CVC Tecnical Report Abbreviated Journal
Volume 141 Issue Pages
Keywords Projection, Back-projection, CT scan, Euclidean geometry, Radon transform
Abstract One of the biggest drawbacks related to the use of CT scanners is the cost (in memory and in time) associated. In this project many methods to simulate their functioning, but in a more feasible way (taking an industrial point of view), will be studied.
The main group of techniques that are being used are the one entitled as ’back-projection’. The concept behind is to simulate the X ray emission in CT scans by lines that cross with the image we want to reconstruct.
In the first part of this document euclidean geometry is used to face the tasks of projec- tion and back-projection. After analysing the results achieved it has been proved that this approach does not lead to a fully perfect reconstruction (and also has some other problems related to running time and memory cost). Because of this in the second part of the document ’Filtered Back-projection’ method is introduced in order to improve the results.
Filtered Back-projection methods rely on mathematical transforms (Fourier, Radon) in order to provide more accurate results that can be obtained in much less time. The main cause of this better results is the use of a filtering process before the back-projection in order to avoid high frequency-caused errors.
As a result of this project two different implementations (one for each approach) had been implemented in order to compare their performance.
Address
Corporate Author Computer Vision Center Thesis Master's thesis
Publisher Place of Publication Barcelona, Spain Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area 800 Expedition Conference
Notes MV; Approved no
Call Number IAM @ iam @ Ber2009 Serial 1693
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Author (down) Jorge Bernal
Title Polyp Localization and Segmentation in Colonoscopy Images by Means of a Model of Appearance for Polyps Type Book Whole
Year 2012 Publication PhD Thesis, Universitat Autonoma de Barcelona-CVC Abbreviated Journal
Volume Issue Pages
Keywords
Abstract Colorectal cancer is the fourth most common cause of cancer death worldwide and its survival rate depends on the stage in which it is detected on hence the necessity for an early colon screening. There are several screening techniques but colonoscopy is still nowadays the gold standard, although it has some drawbacks such as the miss rate. Our contribution, in the field of intelligent systems for colonoscopy, aims at providing a polyp localization and a polyp segmentation system based on a model of appearance for polyps. To develop both methods we define a model of appearance for polyps, which describes a polyp as enclosed by intensity valleys. The novelty of our contribution resides on the fact that we include in our model aspects of the image formation and we also consider the presence of other elements from the endoluminal scene such as specular highlights and blood vessels, which have an impact on the performance of our methods. In order to develop our polyp localization method we accumulate valley information in order to generate energy maps, which are also used to guide the polyp segmentation. Our methods achieve promising results in polyp localization and segmentation. As we want to explore the usability of our methods we present a comparative analysis between physicians fixations obtained via an eye tracking device and our polyp localization method. The results show that our method is indistinguishable to novice physicians although it is far from expert physicians.
Address
Corporate Author Thesis Ph.D. thesis
Publisher Ediciones Graficas Rey Place of Publication Editor F. Javier Sanchez;Fernando Vilariño
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area 800 Expedition Conference
Notes MV Approved no
Call Number Admin @ si @ Ber2012 Serial 2211
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Author (down) Joan M. Nuñez; Jorge Bernal; F. Javier Sanchez; Fernando Vilariño
Title Blood Vessel Characterization in Colonoscopy Images to Improve Polyp Localization Type Conference Article
Year 2013 Publication Proceedings of the International Conference on Computer Vision Theory and Applications Abbreviated Journal
Volume 1 Issue Pages 162-171
Keywords Colonoscopy; Blood vessel; Linear features; Valley detection
Abstract This paper presents an approach to mitigate the contribution of blood vessels to the energy image used at different tasks of automatic colonoscopy image analysis. This goal is achieved by introducing a characterization of endoluminal scene objects which allows us to differentiate between the trace of 2-dimensional visual objects,such as vessels, and shades from 3-dimensional visual objects, such as folds. The proposed characterization is based on the influence that the object shape has in the resulting visual feature, and it leads to the development of a blood vessel attenuation algorithm. A database consisting of manually labelled masks was built in order to test the performance of our method, which shows an encouraging success in blood vessel mitigation while keeping other structures intact. Moreover, by extending our method to the only available polyp localization
algorithm tested on a public database, blood vessel mitigation proved to have a positive influence on the overall performance.
Address Barcelona; February 2013
Corporate Author Thesis
Publisher SciTePress Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area 800 Expedition Conference VISIGRAPP
Notes MV; 600.054; 600.057;SIAI Approved no
Call Number IAM @ iam @ NBS2013 Serial 2198
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Author (down) Joan M. Nuñez; Debora Gil; Fernando Vilariño
Title Finger joint characterization from X-ray images for rheymatoid arthritis assessment Type Conference Article
Year 2013 Publication 6th International Conference on Biomedical Electronics and Devices Abbreviated Journal
Volume Issue Pages 288-292
Keywords Rheumatoid Arthritis; X-Ray; Hand Joint; Sclerosis; Sharp Van der Heijde
Abstract In this study we propose amodular systemfor automatic rheumatoid arthritis assessment which provides a joint space width measure. A hand joint model is proposed based on the accurate analysis of a X-ray finger joint image sample set. This model shows that the sclerosis and the lower bone are the main necessary features in order to perform a proper finger joint characterization. We propose sclerosis and lower bone detection methods as well as the experimental setup necessary for its performance assessment. Our characterization is used to propose and compute a joint space width score which is shown to be related to the different degrees of arthritis. This assertion is verified by comparing our proposed score with Sharp Van der Heijde score, confirming that the lower our score is the more advanced is the patient affection.
Address Barcelona; February 2013
Corporate Author Thesis
Publisher SciTePress Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area 800 Expedition Conference BIODEVICES
Notes IAM;MV; 600.057; 600.054;SIAI Approved no
Call Number IAM @ iam @ NGV2013 Serial 2196
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Author (down) Gerard Lacey; Fernando Vilariño
Title Endoscopy system with motion sensors Type Patent
Year 2011 Publication US 2011/0032347 A1 Abbreviated Journal
Volume Issue Pages
Keywords
Abstract An endoscopy system (1) comprises an endoscope (2) with a camera (3) at its tip. The endoscope extends through an endoscope guide (4) for guiding movement of the endoscope and for measurement of its movement as it enters the body. The guide (4) comprises a generally conical body (5) having a through passage (105) through which the endoscope (2) extends. A motion sensor comprises an optical transmitter (7) and a detector (8) mounted alongside the passage (105) to measure the insertion-withdrawal linear motion and also rotation of the endoscope by the endoscopist's hand. The system (1) also comprises a flexure controller (10) having wheels operated by the endoscopist. The camera (3), the motion sensor (7/8), and the flexure controller (10) are all connected to a processor (11) which feeds a display.
Address Jacobson Holman PPLC; 400 Seventh Street, N.W. Suite 600; Whashington DC 20004 DC
Corporate Author USPTO Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area 800 Expedition Conference
Notes MV;SIAI Approved no
Call Number IAM @ iam @ LaV2011 Serial 1703
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Author (down) Fernando Vilariño; Stephan Ameling; Gerard Lacey; Stephen Patchett; Hugh Mulcahy
Title Eye Tracking Search Patterns in Expert and Trainee Colonoscopists: A Novel Method of Assessing Endoscopic Competency? Type Journal Article
Year 2009 Publication Gastrointestinal Endoscopy Abbreviated Journal GI
Volume 69 Issue 5 Pages 370
Keywords
Abstract
Address
Corporate Author Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area 800 Expedition Conference
Notes MV;SIAI Approved no
Call Number fernando @ fernando @ Serial 2420
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Author (down) Fernando Vilariño; Panagiota Spyridonos; Petia Radeva; Jordi Vitria; Fernando Azpiroz; Juan Malagelada
Title Device, system and method for measurement and analysis of contractile activity Type Patent
Year 2009 Publication US 2009/0202117 A1 Abbreviated Journal
Volume Issue Pages
Keywords
Abstract A method and system for determining intestinal dysfunction condition are provided by classifying and analyzing image frames captured in-vivo. The method and system also relate to the detection of contractile activity in intestinal tracts, to automatic detection of video image frames taken in the gastrointestinal tract including contractile activity, and more particularly to measurement and analysis of contractile activity of the GI tract based on image intensity of in vivo image data.
Address Pearl Cohen Zedek Latzer
Corporate Author Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area 800 Expedition Conference
Notes MV;OR;MILAB;SIAI Approved no
Call Number IAM @ iam @ VSR2009 Serial 1704
Permanent link to this record
 
 
Author (down) Fernando Vilariño; Panagiota Spyridonos; Petia Radeva; Jordi Vitria; Fernando Azpiroz; Juan Malagelada
Title Method for automatic classification of in vivo images Type Patent
Year 2010 Publication US 2010/0046816 Abbreviated Journal
Volume Issue Pages
Keywords
Abstract A method for automatically detecting a post-duodenal boundary in an image stream of the gastrointestinal (GI) tract. The image stream is sampled to obtain a reduced set of images for processing. The reduced set of images is filtered to remove non-valid frames or non-valid portions of frames, thereby generating a filtered set of valid images. A polar representation of the valid images is generated. Textural features of the polar representation are processed to detect the post-duodenal boundary of the GI tract.
Address
Corporate Author Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area 800 Expedition Conference
Notes MV;OR;MILAB;SIAI Approved no
Call Number IAM @ iam @ VSR2010 Serial 1702
Permanent link to this record
 
 
Author (down) Fernando Vilariño; Panagiota Spyridonos; Jordi Vitria; Fernando Azpiroz; Petia Radeva
Title Cascade analysis for intestinal contraction detection Type Conference Article
Year 2006 Publication 20th International Congress and exhibition Computer Assisted Radiology and Surgery Abbreviated Journal
Volume Issue Pages 9-10
Keywords intestine video analysis, anisotropic features, support vector machine, cascade of classifiers
Abstract In this work, we address the study of intestinal contractions in a novel approach based on a machine learning framework to process data from Wireless Capsule Video Endoscopy. Wireless endoscopy represents a unique way to visualize the intestine motility by creating long videos to visualize intestine dynamics. In this paper we argue that to analyze huge amount of wireless endoscopy data and define robust methods for contraction detection we should base our approach on sophisticated machine learning techniques. In particular, we propose a cascade of classifiers in order to remove different physiological phenomenon and obtain the motility pattern of small intestines. Our results show obtaining high specificity and sensitivity rates that highlight the high efficiency of the selected approach and support the feasibility of the proposed methodology in the automatic detection and analysis of intestine contractions.
Address Osaka (Japan)
Corporate Author Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area 800 Expedition Conference CARS
Notes MV;OR;MILAB;SIAI Approved no
Call Number BCNPCL @ bcnpcl @ VSV2006a; IAM @ iam @ VSV2006h Serial 726
Permanent link to this record
 
 
Author (down) Fernando Vilariño; Panagiota Spyridonos; Jordi Vitria; Fernando Azpiroz; Petia Radeva
Title Automatic Detection of Intestinal Juices in Wireless Capsule Video Endoscopy Type Conference Article
Year 2006 Publication 18th International Conference on Pattern Recognition Abbreviated Journal
Volume 4 Issue Pages 719-722
Keywords Clinical diagnosis , Endoscopes , Fluids and secretions , Gabor filters , Hospitals , Image sequence analysis , Intestines , Lighting , Shape , Visualization
Abstract Wireless capsule video endoscopy is a novel and challenging clinical technique, whose major reported drawback relates to the high amount of time needed for video visualization. In this paper, we propose a method for the rejection of the parts of the video resulting not valid for analysis by means of automatic detection of intestinal juices. We applied Gabor filters for the characterization of the bubble-like shape of intestinal juices in fasting patients. Our method achieves a significant reduction in visualization time, with no relevant loss of valid frames. The proposed approach is easily extensible to other image analysis scenarios where the described pattern of bubbles can be found.
Address Hong Kong
Corporate Author Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 1051-4651 ISBN 0-7695-2521-0 Medium
Area 800 Expedition Conference ICPR
Notes MV;OR;MILAB;SIAI Approved no
Call Number BCNPCL @ bcnpcl @ VSV2006b; IAM @ iam @ VSV2006g Serial 727
Permanent link to this record
 
 
Author (down) Fernando Vilariño; Panagiota Spyridonos; Jordi Vitria; Carolina Malagelada; Petia Radeva
Title Linear Radial Patterns Characterization for Automatic Detection of Tonic Intestinal Contractions Type Book Chapter
Year 2006 Publication 11th Iberoamerican Congress on Pattern Recognition Abbreviated Journal
Volume 4225 Issue Pages 178–187
Keywords
Abstract This work tackles the categorization of general linear radial patterns by means of the valleys and ridges detection and the use of descriptors of directional information, which are provided by steerable filters in different regions of the image. We successfully apply our proposal in the specific case of automatic detection of tonic contractions in video capsule endoscopy, which represent a paradigmatic example of linear radial patterns.
Address Cancun (Mexico)
Corporate Author Thesis
Publisher Springer Verlag Place of Publication Berlin Heidelberg Editor .F. Mart ́ınez-Trinidad et al
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title LNCS
Series Volume Series Issue Edition
ISSN ISBN Medium
Area 800 Expedition Conference
Notes MV;OR;MILAB;SIAI Approved no
Call Number BCNPCL @ bcnpcl @ VSV2006c; IAM @ iam @ VSB2006f Serial 728
Permanent link to this record
 
 
Author (down) Fernando Vilariño; Panagiota Spyridonos; Jordi Vitria; Carolina Malagelada; Petia Radeva
Title A Machine Learning framework using SOMs: Applications in the Intestinal Motility Assessment Type Book Chapter
Year 2006 Publication 11th Iberoamerican Congress on Pattern Recognition Abbreviated Journal
Volume 4225 Issue Pages 188–197
Keywords
Abstract Small Bowel Motility Assessment by means of Wireless Capsule Video Endoscopy constitutes a novel clinical methodology in which a capsule with a micro-camera attached to it is swallowed by the patient, emitting a RF signal which is recorded as a video of its trip throughout the gut. In order to overcome the main drawbacks associated with this technique -mainly related to the large amount of visualization time required-, our efforts have been focused on the development of a machine learning system, built up in sequential stages, which provides the specialists with the useful part of the video, rejecting those parts not valid for analysis. We successfully used Self Organized Maps in a general semi-supervised framework with the aim of tackling the different learning stages of our system. The analysis of the diverse types of images and the automatic detection of intestinal contractions is performed under the perspective of intestinal motility assessment in a clinical environment.
Address Cancun (Mexico)
Corporate Author Thesis
Publisher Springer Verlag Place of Publication Berlin-Heidelberg Editor J.P. Martinez–Trinidad et al
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title LNCS
Series Volume Series Issue Edition
ISSN ISBN Medium
Area 800 Expedition Conference CIARP06
Notes MV;OR;MILAB;SIAI Approved no
Call Number BCNPCL @ bcnpcl @ VSV2006d; IAM @ iam @ VSV2006e Serial 729
Permanent link to this record