Debora Gil, Ruth Aris, Agnes Borras, Esmitt Ramirez, Rafael Sebastian, & Mariano Vazquez. (2019). Influence of fiber connectivity in simulations of cardiac biomechanics. IJCAR - International Journal of Computer Assisted Radiology and Surgery, 14(1), 63–72.
Abstract: PURPOSE:
Personalized computational simulations of the heart could open up new improved approaches to diagnosis and surgery assistance systems. While it is fully recognized that myocardial fiber orientation is central for the construction of realistic computational models of cardiac electromechanics, the role of its overall architecture and connectivity remains unclear. Morphological studies show that the distribution of cardiac muscular fibers at the basal ring connects epicardium and endocardium. However, computational models simplify their distribution and disregard the basal loop. This work explores the influence in computational simulations of fiber distribution at different short-axis cuts.
METHODS:
We have used a highly parallelized computational solver to test different fiber models of ventricular muscular connectivity. We have considered two rule-based mathematical models and an own-designed method preserving basal connectivity as observed in experimental data. Simulated cardiac functional scores (rotation, torsion and longitudinal shortening) were compared to experimental healthy ranges using generalized models (rotation) and Mahalanobis distances (shortening, torsion).
RESULTS:
The probability of rotation was significantly lower for ruled-based models [95% CI (0.13, 0.20)] in comparison with experimental data [95% CI (0.23, 0.31)]. The Mahalanobis distance for experimental data was in the edge of the region enclosing 99% of the healthy population.
CONCLUSIONS:
Cardiac electromechanical simulations of the heart with fibers extracted from experimental data produce functional scores closer to healthy ranges than rule-based models disregarding architecture connectivity.
Keywords: Cardiac electromechanical simulations; Diffusion tensor imaging; Fiber connectivity
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Debora Gil, Sergio Vera, Agnes Borras, Albert Andaluz, & Miguel Angel Gonzalez Ballester. (2017). Anatomical Medial Surfaces with Efficient Resolution of Branches Singularities. MIA - Medical Image Analysis, 35, 390–402.
Abstract: Medial surfaces are powerful tools for shape description, but their use has been limited due to the sensibility existing methods to branching artifacts. Medial branching artifacts are associated to perturbations of the object boundary rather than to geometric features. Such instability is a main obstacle for a con dent application in shape recognition and description. Medial branches correspond to singularities of the medial surface and, thus, they are problematic for existing morphological and energy-based algorithms. In this paper, we use algebraic geometry concepts in an energy-based approach to compute a medial surface presenting a stable branching topology. We also present an ecient GPU-CPU implementation using standard image processing tools. We show the method computational eciency and quality on a custom made synthetic database. Finally, we present some results on a medical imaging application for localization of abdominal pathologies.
Keywords: Medial Representations; Shape Recognition; Medial Branching Stability ; Singular Points
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Debora Gil, Agnes Borras, Ruth Aris, Mariano Vazquez, Pierre Lafortune, & Guillame Houzeaux. (2012). What a difference in biomechanics cardiac fiber makes. In Statistical Atlases And Computational Models Of The Heart: Imaging and Modelling Challenges (Vol. 7746, pp. 253–260). Springer Berlin Heidelberg.
Abstract: Computational simulations of the heart are a powerful tool for a comprehensive understanding of cardiac function and its intrinsic relationship with its muscular architecture. Cardiac biomechanical models require a vector field representing the orientation of cardiac fibers. A wrong orientation of the fibers can lead to a
non-realistic simulation of the heart functionality. In this paper we explore the impact of the fiber information on the simulated biomechanics of cardiac muscular anatomy. We have used the John Hopkins database to perform a biomechanical simulation using both a synthetic benchmark fiber distribution and the data obtained experimentally from DTI. Results illustrate how differences in fiber orientation affect heart deformation along cardiac cycle.
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Dena Bazazian. (2018). Fully Convolutional Networks for Text Understanding in Scene Images (Dimosthenis Karatzas, & Andrew Bagdanov, Eds.). Ph.D. thesis, Ediciones Graficas Rey, .
Abstract: Text understanding in scene images has gained plenty of attention in the computer vision community and it is an important task in many applications as text carries semantically rich information about scene content and context. For instance, reading text in a scene can be applied to autonomous driving, scene understanding or assisting visually impaired people. The general aim of scene text understanding is to localize and recognize text in scene images. Text regions are first localized in the original image by a trained detector model and afterwards fed into a recognition module. The tasks of localization and recognition are highly correlated since an inaccurate localization can affect the recognition task.
The main purpose of this thesis is to devise efficient methods for scene text understanding. We investigate how the latest results on deep learning can advance text understanding pipelines. Recently, Fully Convolutional Networks (FCNs) and derived methods have achieved a significant performance on semantic segmentation and pixel level classification tasks. Therefore, we took benefit of the strengths of FCN approaches in order to detect text in natural scenes. In this thesis we have focused on two challenging tasks of scene text understanding which are Text Detection and Word Spotting. For the task of text detection, we have proposed an efficient text proposal technique in scene images. We have considered the Text Proposals method as the baseline which is an approach to reduce the search space of possible text regions in an image. In order to improve the Text Proposals method we combined it with Fully Convolutional Networks to efficiently reduce the number of proposals while maintaining the same level of accuracy and thus gaining a significant speed up. Our experiments demonstrate that this text proposal approach yields significantly higher recall rates than the line based text localization techniques, while also producing better-quality localization. We have also applied this technique on compressed images such as videos from wearable egocentric cameras. For the task of word spotting, we have introduced a novel mid-level word representation method. We have proposed a technique to create and exploit an intermediate representation of images based on text attributes which roughly correspond to character probability maps. Our representation extends the concept of Pyramidal Histogram Of Characters (PHOC) by exploiting Fully Convolutional Networks to derive a pixel-wise mapping of the character distribution within candidate word regions. We call this representation the Soft-PHOC. Furthermore, we show how to use Soft-PHOC descriptors for word spotting tasks through an efficient text line proposal algorithm. To evaluate the detected text, we propose a novel line based evaluation along with the classic bounding box based approach. We test our method on incidental scene text images which comprises real-life scenarios such as urban scenes. The importance of incidental scene text images is due to the complexity of backgrounds, perspective, variety of script and language, short text and little linguistic context. All of these factors together makes the incidental scene text images challenging.
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Dena Bazazian, Dimosthenis Karatzas, & Andrew Bagdanov. (2018). Soft-PHOC Descriptor for End-to-End Word Spotting in Egocentric Scene Images. In International Workshop on Egocentric Perception, Interaction and Computing at ECCV.
Abstract: Word spotting in natural scene images has many applications in scene understanding and visual assistance. We propose Soft-PHOC, an intermediate representation of images based on character probability maps. Our representation extends the concept of the Pyramidal Histogram Of Characters (PHOC) by exploiting Fully Convolutional Networks to derive a pixel-wise mapping of the character distribution within candidate word regions. We show how to use our descriptors for word spotting tasks in egocentric camera streams through an efficient text line proposal algorithm. This is based on the Hough Transform over character attribute maps followed by scoring using Dynamic Time Warping (DTW). We evaluate our results on ICDAR 2015 Challenge 4 dataset of incidental scene text captured by an egocentric camera.
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Dena Bazazian, Dimosthenis Karatzas, & Andrew Bagdanov. (2018). Word Spotting in Scene Images based on Character Recognition. In IEEE/CVF Conference on Computer Vision and Pattern Recognition Workshops (pp. 1872–1874).
Abstract: In this paper we address the problem of unconstrained Word Spotting in scene images. We train a Fully Convolutional Network to produce heatmaps of all the character classes. Then, we employ the Text Proposals approach and, via a rectangle classifier, detect the most likely rectangle for each query word based on the character attribute maps. We evaluate the proposed method on ICDAR2015 and show that it is capable of identifying and recognizing query words in natural scene images.
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Dena Bazazian, Raul Gomez, Anguelos Nicolaou, Lluis Gomez, Dimosthenis Karatzas, & Andrew Bagdanov. (2016). Improving Text Proposals for Scene Images with Fully Convolutional Networks. In 23rd International Conference on Pattern Recognition Workshops.
Abstract: Text Proposals have emerged as a class-dependent version of object proposals – efficient approaches to reduce the search space of possible text object locations in an image. Combined with strong word classifiers, text proposals currently yield top state of the art results in end-to-end scene text
recognition. In this paper we propose an improvement over the original Text Proposals algorithm of [1], combining it with Fully Convolutional Networks to improve the ranking of proposals. Results on the ICDAR RRC and the COCO-text datasets show superior performance over current state-of-the-art.
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Dena Bazazian, Raul Gomez, Anguelos Nicolaou, Lluis Gomez, Dimosthenis Karatzas, & Andrew Bagdanov. (2019). Fast: Facilitated and accurate scene text proposals through fcn guided pruning. PRL - Pattern Recognition Letters, 119, 112–120.
Abstract: Class-specific text proposal algorithms can efficiently reduce the search space for possible text object locations in an image. In this paper we combine the Text Proposals algorithm with Fully Convolutional Networks to efficiently reduce the number of proposals while maintaining the same recall level and thus gaining a significant speed up. Our experiments demonstrate that such text proposal approaches yield significantly higher recall rates than state-of-the-art text localization techniques, while also producing better-quality localizations. Our results on the ICDAR 2015 Robust Reading Competition (Challenge 4) and the COCO-text datasets show that, when combined with strong word classifiers, this recall margin leads to state-of-the-art results in end-to-end scene text recognition.
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Dennis G.Romero, Anselmo Frizera, Angel Sappa, Boris X. Vintimilla, & Teodiano F.Bastos. (2015). A predictive model for human activity recognition by observing actions and context. In Advanced Concepts for Intelligent Vision Systems, Proceedings of 16th International Conference, ACIVS 2015 (Vol. 9386, pp. 323–333). LNCS. Springer International Publishing.
Abstract: This paper presents a novel model to estimate human activities — a human activity is defined by a set of human actions. The proposed approach is based on the usage of Recurrent Neural Networks (RNN) and Bayesian inference through the continuous monitoring of human actions and its surrounding environment. In the current work human activities are inferred considering not only visual analysis but also additional resources; external sources of information, such as context information, are incorporated to contribute to the activity estimation. The novelty of the proposed approach lies in the way the information is encoded, so that it can be later associated according to a predefined semantic structure. Hence, a pattern representing a given activity can be defined by a set of actions, plus contextual information or other kind of information that could be relevant to describe the activity. Experimental results with real data are provided showing the validity of the proposed approach.
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Dennis H. Lundtoft, Kamal Nasrollahi, Thomas B. Moeslund, & Sergio Escalera. (2016). Spatiotemporal Facial Super-Pixels for Pain Detection. In 9th Conference on Articulated Motion and Deformable Objects.
Abstract: Best student paper award.
Pain detection using facial images is of critical importance in many Health applications. Since pain is a spatiotemporal process, recent works on this topic employ facial spatiotemporal features to detect pain. These systems extract such features from the entire area of the face. In this paper, we show that by employing super-pixels we can divide the face into three regions, in a way that only one of these regions (about one third of the face) contributes to the pain estimation and the other two regions can be discarded. The experimental results on the UNBCMcMaster database show that the proposed system using this single region outperforms state-of-the-art systems in detecting no-pain scenarios, while it reaches comparable results in detecting weak and severe pain scenarios.
Keywords: Facial images; Super-pixels; Spatiotemporal filters; Pain detection
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Diana Ramirez Cifuentes, Ana Freire, Ricardo Baeza Yates, Joaquim Punti Vidal, Pilar Medina Bravo, Diego Velazquez, et al. (2020). Detection of Suicidal Ideation on Social Media: Multimodal, Relational, and Behavioral Analysis. JMIR - Journal of Medical Internet Research, 22(7), e17758.
Abstract: Background:
Suicide risk assessment usually involves an interaction between doctors and patients. However, a significant number of people with mental disorders receive no treatment for their condition due to the limited access to mental health care facilities; the reduced availability of clinicians; the lack of awareness; and stigma, neglect, and discrimination surrounding mental disorders. In contrast, internet access and social media usage have increased significantly, providing experts and patients with a means of communication that may contribute to the development of methods to detect mental health issues among social media users.
Objective:
This paper aimed to describe an approach for the suicide risk assessment of Spanish-speaking users on social media. We aimed to explore behavioral, relational, and multimodal data extracted from multiple social platforms and develop machine learning models to detect users at risk.
Methods:
We characterized users based on their writings, posting patterns, relations with other users, and images posted. We also evaluated statistical and deep learning approaches to handle multimodal data for the detection of users with signs of suicidal ideation (suicidal ideation risk group). Our methods were evaluated over a dataset of 252 users annotated by clinicians. To evaluate the performance of our models, we distinguished 2 control groups: users who make use of suicide-related vocabulary (focused control group) and generic random users (generic control group).
Results:
We identified significant statistical differences between the textual and behavioral attributes of each of the control groups compared with the suicidal ideation risk group. At a 95% CI, when comparing the suicidal ideation risk group and the focused control group, the number of friends (P=.04) and median tweet length (P=.04) were significantly different. The median number of friends for a focused control user (median 578.5) was higher than that for a user at risk (median 372.0). Similarly, the median tweet length was higher for focused control users, with 16 words against 13 words of suicidal ideation risk users. Our findings also show that the combination of textual, visual, relational, and behavioral data outperforms the accuracy of using each modality separately. We defined text-based baseline models based on bag of words and word embeddings, which were outperformed by our models, obtaining an increase in accuracy of up to 8% when distinguishing users at risk from both types of control users.
Conclusions:
The types of attributes analyzed are significant for detecting users at risk, and their combination outperforms the results provided by generic, exclusively text-based baseline models. After evaluating the contribution of image-based predictive models, we believe that our results can be improved by enhancing the models based on textual and relational features. These methods can be extended and applied to different use cases related to other mental disorders.
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Diana Ramirez Cifuentes, Ana Freire, Ricardo Baeza Yates, Nadia Sanz Lamora, Aida Alvarez, Alexandre Gonzalez, et al. (2021). Characterization of Anorexia Nervosa on Social Media: Textual, Visual, Relational, Behavioral, and Demographical Analysis. JMIR - Journal of Medical Internet Research, 23(7), e25925.
Abstract: Background: Eating disorders are psychological conditions characterized by unhealthy eating habits. Anorexia nervosa (AN) is defined as the belief of being overweight despite being dangerously underweight. The psychological signs involve emotional and behavioral issues. There is evidence that signs and symptoms can manifest on social media, wherein both harmful and beneficial content is shared daily.
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Diego Alejandro Cheda. (2012). Monocular Depth Cues in Computer Vision Applications (Daniel Ponsa, & Antonio Lopez, Eds.). Ph.D. thesis, Ediciones Graficas Rey, .
Abstract: Depth perception is a key aspect of human vision. It is a routine and essential visual task that the human do effortlessly in many daily activities. This has often been associated with stereo vision, but humans have an amazing ability to perceive depth relations even from a single image by using several monocular cues.
In the computer vision field, if image depth information were available, many tasks could be posed from a different perspective for the sake of higher performance and robustness. Nevertheless, given a single image, this possibility is usually discarded, since obtaining depth information has frequently been performed by three-dimensional reconstruction techniques, requiring two or more images of the same scene taken from different viewpoints. Recently, some proposals have shown the feasibility of computing depth information from single images. In essence, the idea is to take advantage of a priori knowledge of the acquisition conditions and the observed scene to estimate depth from monocular pictorial cues. These approaches try to precisely estimate the scene depth maps by employing computationally demanding techniques. However, to assist many computer vision algorithms, it is not really necessary computing a costly and detailed depth map of the image. Indeed, just a rough depth description can be very valuable in many problems.
In this thesis, we have demonstrated how coarse depth information can be integrated in different tasks following alternative strategies to obtain more precise and robust results. In that sense, we have proposed a simple, but reliable enough technique, whereby image scene regions are categorized into discrete depth ranges to build a coarse depth map. Based on this representation, we have explored the potential usefulness of our method in three application domains from novel viewpoints: camera rotation parameters estimation, background estimation and pedestrian candidate generation. In the first case, we have computed camera rotation mounted in a moving vehicle applying two novels methods based on distant elements in the image, where the translation component of the image flow vectors is negligible. In background estimation, we have proposed a novel method to reconstruct the background by penalizing close regions in a cost function, which integrates color, motion, and depth terms. Finally, we have benefited of geometric and depth information available on single images for pedestrian candidate generation to significantly reduce the number of generated windows to be further processed by a pedestrian classifier. In all cases, results have shown that our approaches contribute to better performances.
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Diego Alejandro Cheda. (2009). Monocular egomotion estimation for ADAS application (Vol. 148). Ph.D. thesis, , Bellaterra, Barcelona.
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Diego Alejandro Cheda, Daniel Ponsa, & Antonio Lopez. (2010). Camera Egomotion Estimation in the ADAS Context. In 13th International IEEE Annual Conference on Intelligent Transportation Systems (1415–1420).
Abstract: Camera-based Advanced Driver Assistance Systems (ADAS) have concentrated many research efforts in the last decades. Proposals based on monocular cameras require the knowledge of the camera pose with respect to the environment, in order to reach an efficient and robust performance. A common assumption in such systems is considering the road as planar, and the camera pose with respect to it as approximately known. However, in real situations, the camera pose varies along time due to the vehicle movement, the road slope, and irregularities on the road surface. Thus, the changes in the camera position and orientation (i.e., the egomotion) are critical information that must be estimated at every frame to avoid poor performances. This work focuses on egomotion estimation from a monocular camera under the ADAS context. We review and compare egomotion methods with simulated and real ADAS-like sequences. Basing on the results of our experiments, we show which of the considered nonlinear and linear algorithms have the best performance in this domain.
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