Soumick Chatterjee, Fatima Saad, Chompunuch Sarasaen, Suhita Ghosh, Rupali Khatun, Petia Radeva, et al. (2020). Exploration of Interpretability Techniques for Deep COVID-19 Classification using Chest X-ray Images.
Abstract: CoRR abs/2006.02570
The outbreak of COVID-19 has shocked the entire world with its fairly rapid spread and has challenged different sectors. One of the most effective ways to limit its spread is the early and accurate diagnosis of infected patients. Medical imaging such as X-ray and Computed Tomography (CT) combined with the potential of Artificial Intelligence (AI) plays an essential role in supporting the medical staff in the diagnosis process. Thereby, the use of five different deep learning models (ResNet18, ResNet34, InceptionV3, InceptionResNetV2, and DenseNet161) and their Ensemble have been used in this paper, to classify COVID-19, pneumoniæ and healthy subjects using Chest X-Ray. Multi-label classification was performed to predict multiple pathologies for each patient, if present. Foremost, the interpretability of each of the networks was thoroughly studied using techniques like occlusion, saliency, input X gradient, guided backpropagation, integrated gradients, and DeepLIFT. The mean Micro-F1 score of the models for COVID-19 classifications ranges from 0.66 to 0.875, and is 0.89 for the Ensemble of the network models. The qualitative results depicted the ResNets to be the most interpretable model.
|
Sounak Dey, Anjan Dutta, Juan Ignacio Toledo, Suman Ghosh, Josep Llados, & Umapada Pal. (2018). SigNet: Convolutional Siamese Network for Writer Independent Offline Signature Verification.
Abstract: Offline signature verification is one of the most challenging tasks in biometrics and document forensics. Unlike other verification problems, it needs to model minute but critical details between genuine and forged signatures, because a skilled falsification might often resembles the real signature with small deformation. This verification task is even harder in writer independent scenarios which is undeniably fiscal for realistic cases. In this paper, we model an offline writer independent signature verification task with a convolutional Siamese network. Siamese networks are twin networks with shared weights, which can be trained to learn a feature space where similar observations are placed in proximity. This is achieved by exposing the network to a pair of similar and dissimilar observations and minimizing the Euclidean distance between similar pairs while simultaneously maximizing it between dissimilar pairs. Experiments conducted on cross-domain datasets emphasize the capability of our network to model forgery in different languages (scripts) and handwriting styles. Moreover, our designed Siamese network, named SigNet, exceeds the state-of-the-art results on most of the benchmark signature datasets, which paves the way for further research in this direction.
|
Spyridon Bakas, Mauricio Reyes, Andras Jakab, Stefan Bauer, Markus Rempfler, Alessandro Crimi, et al. (2018). Identifying the best machine learning algorithms for brain tumor segmentation, progression assessment, and overall survival prediction in the BRATS challenge.
Abstract: Gliomas are the most common primary brain malignancies, with different degrees of aggressiveness, variable prognosis and various heterogeneous histologic sub-regions, i.e., peritumoral edematous/invaded tissue, necrotic core, active and non-enhancing core. This intrinsic heterogeneity is also portrayed in their radio-phenotype, as their sub-regions are depicted by varying intensity profiles disseminated across multiparametric magnetic resonance imaging (mpMRI) scans, reflecting varying biological properties. Their heterogeneous shape, extent, and location are some of the factors that make these tumors difficult to resect, and in some cases inoperable. The amount of resected tumor is a factor also considered in longitudinal scans, when evaluating the apparent tumor for potential diagnosis of progression. Furthermore, there is mounting evidence that accurate segmentation of the various tumor sub-regions can offer the basis for quantitative image analysis towards prediction of patient overall survival. This study assesses the state-of-the-art machine learning (ML) methods used for brain tumor image analysis in mpMRI scans, during the last seven instances of the International Brain Tumor Segmentation (BraTS) challenge, i.e. 2012-2018. Specifically, we focus on i) evaluating segmentations of the various glioma sub-regions in preoperative mpMRI scans, ii) assessing potential tumor progression by virtue of longitudinal growth of tumor sub-regions, beyond use of the RECIST criteria, and iii) predicting the overall survival from pre-operative mpMRI scans of patients that undergone gross total resection. Finally, we investigate the challenge of identifying the best ML algorithms for each of these tasks, considering that apart from being diverse on each instance of the challenge, the multi-institutional mpMRI BraTS dataset has also been a continuously evolving/growing dataset.
Keywords: BraTS; challenge; brain; tumor; segmentation; machine learning; glioma; glioblastoma; radiomics; survival; progression; RECIST
|
Stefan Lonn, Petia Radeva, & Mariella Dimiccoli. (2018). A picture is worth a thousand words but how to organize thousands of pictures?.
Abstract: We live in a society where the large majority of the population has a camera-equipped smartphone. In addition, hard drives and cloud storage are getting cheaper and cheaper, leading to a tremendous growth in stored personal photos. Unlike photo collections captured by a digital camera, which typically are pre-processed by the user who organizes them into event-related folders, smartphone pictures are automatically stored in the cloud. As a consequence, photo collections captured by a smartphone are highly unstructured and because smartphones are ubiquitous, they present a larger variability compared to pictures captured by a digital camera. To solve the need of organizing large smartphone photo collections automatically, we propose here a new methodology for hierarchical photo organization into topics and topic-related categories. Our approach successfully estimates latent topics in the pictures by applying probabilistic Latent Semantic Analysis, and automatically assigns a name to each topic by relying on a lexical database. Topic-related categories are then estimated by using a set of topic-specific Convolutional Neuronal Networks. To validate our approach, we ensemble and make public a large dataset of more than 8,000 smartphone pictures from 10 persons. Experimental results demonstrate better user satisfaction with respect to state of the art solutions in terms of organization.
|
Umut Guclu, Yagmur Gucluturk, Meysam Madadi, Sergio Escalera, Xavier Baro, Jordi Gonzalez, et al. (2017). End-to-end semantic face segmentation with conditional random fields as convolutional, recurrent and adversarial networks.
Abstract: arXiv:1703.03305
Recent years have seen a sharp increase in the number of related yet distinct advances in semantic segmentation. Here, we tackle this problem by leveraging the respective strengths of these advances. That is, we formulate a conditional random field over a four-connected graph as end-to-end trainable convolutional and recurrent networks, and estimate them via an adversarial process. Importantly, our model learns not only unary potentials but also pairwise
potentials, while aggregating multi-scale contexts and controlling higher-order inconsistencies.
We evaluate our model on two standard benchmark datasets for semantic face segmentation, achieving state-of-the-art results on both of them.
|
Wenjuan Gong, Y.Huang, Jordi Gonzalez, & Liang Wang. (2015). An Effective Solution to Double Counting Problem in Human Pose Estimation.
Abstract: The mixture of parts model has been successfully applied to solve the 2D
human pose estimation problem either as an explicitly trained body part model
or as latent variables for pedestrian detection. Even in the era of massive
applications of deep learning techniques, the mixture of parts model is still
effective in solving certain problems, especially in the case with limited
numbers of training samples. In this paper, we consider using the mixture of
parts model for pose estimation, wherein a tree structure is utilized for
representing relations between connected body parts. This strategy facilitates
training and inferencing of the model but suffers from double counting
problems, where one detected body part is counted twice due to lack of
constrains among unconnected body parts. To solve this problem, we propose a
generalized solution in which various part attributes are captured by multiple
features so as to avoid the double counted problem. Qualitative and
quantitative experimental results on a public available dataset demonstrate the
effectiveness of our proposed method.
An Effective Solution to Double Counting Problem in Human Pose Estimation – ResearchGate. Available from: http://www.researchgate.net/publication/271218491AnEffectiveSolutiontoDoubleCountingProbleminHumanPose_Estimation [accessed Oct 22, 2015].
Keywords: Pose estimation; double counting problem; mix-ture of parts Model
|
Y. Patel, Lluis Gomez, Raul Gomez, Marçal Rusiñol, Dimosthenis Karatzas, & C.V. Jawahar. (2018). TextTopicNet-Self-Supervised Learning of Visual Features Through Embedding Images on Semantic Text Spaces.
Abstract: The immense success of deep learning based methods in computer vision heavily relies on large scale training datasets. These richly annotated datasets help the network learn discriminative visual features. Collecting and annotating such datasets requires a tremendous amount of human effort and annotations are limited to popular set of classes. As an alternative, learning visual features by designing auxiliary tasks which make use of freely available self-supervision has become increasingly popular in the computer vision community.
In this paper, we put forward an idea to take advantage of multi-modal context to provide self-supervision for the training of computer vision algorithms. We show that adequate visual features can be learned efficiently by training a CNN to predict the semantic textual context in which a particular image is more probable to appear as an illustration. More specifically we use popular text embedding techniques to provide the self-supervision for the training of deep CNN.
|
