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Author Santiago Segui; Laura Igual; Fernando Vilariño; Petia Radeva; Carolina Malagelada; Fernando Azpiroz; Jordi Vitria
Title Diagnostic System for Intestinal Motility Disfunctions Using Video Capsule Endoscopy Type Book Chapter
Year 2008 Publication Computer Vision Systems. 6th International Abbreviated Journal
Volume 5008 Issue Pages 251–260
Keywords
Abstract Wireless Video Capsule Endoscopy is a clinical technique consisting of the analysis of images from the intestine which are pro- vided by an ingestible device with a camera attached to it. In this paper we propose an automatic system to diagnose severe intestinal motility disfunctions using the video endoscopy data. The system is based on the application of computer vision techniques within a machine learn- ing framework in order to obtain the characterization of diverse motil- ity events from video sequences. We present experimental results that demonstrate the effectiveness of the proposed system and compare them with the ground-truth provided by the gastroenterologists.
Address Santorini (Greece)
Corporate Author Thesis
Publisher Springer-Verlag Place of Publication Berlin Heidelberg Editor A. Gasteratos, M. Vincze, and J.K. Tsotsos
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title LNCS
Series Volume Series Issue Edition
ISSN ISBN 978-3-540-79546-9 Medium
Area (down) 800 Expedition Conference ICVS
Notes OR; MV; MILAB; SIAI Approved no
Call Number BCNPCL @ bcnpcl @ SIV2008; IAM @ iam @ SIV2008 Serial 962
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Author Fernando Vilariño; Panagiota Spyridonos; Fosca De Iorio; Jordi Vitria; Fernando Azpiroz; Petia Radeva
Title Intestinal Motility Assessment With Video Capsule Endoscopy: Automatic Annotation of Phasic Intestinal Contractions Type Journal Article
Year 2010 Publication IEEE Transactions on Medical Imaging Abbreviated Journal TMI
Volume 29 Issue 2 Pages 246-259
Keywords
Abstract Intestinal motility assessment with video capsule endoscopy arises as a novel and challenging clinical fieldwork. This technique is based on the analysis of the patterns of intestinal contractions shown in a video provided by an ingestible capsule with a wireless micro-camera. The manual labeling of all the motility events requires large amount of time for offline screening in search of findings with low prevalence, which turns this procedure currently unpractical. In this paper, we propose a machine learning system to automatically detect the phasic intestinal contractions in video capsule endoscopy, driving a useful but not feasible clinical routine into a feasible clinical procedure. Our proposal is based on a sequential design which involves the analysis of textural, color, and blob features together with SVM classifiers. Our approach tackles the reduction of the imbalance rate of data and allows the inclusion of domain knowledge as new stages in the cascade. We present a detailed analysis, both in a quantitative and a qualitative way, by providing several measures of performance and the assessment study of interobserver variability. Our system performs at 70% of sensitivity for individual detection, whilst obtaining equivalent patterns to those of the experts for density of contractions.
Address
Corporate Author IEEE Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 0278-0062 ISBN Medium
Area (down) 800 Expedition Conference
Notes MILAB;MV;OR;SIAI Approved no
Call Number BCNPCL @ bcnpcl @ VSD2010; IAM @ iam @ VSI2010 Serial 1281
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Author Jorge Bernal; Fernando Vilariño; F. Javier Sanchez
Title Feature Detectors and Feature Descriptors: Where We Are Now Type Report
Year 2010 Publication CVC Technical Report Abbreviated Journal
Volume 154 Issue Pages
Keywords
Abstract Feature Detection and Feature Description are clearly nowadays topics. Many Computer Vision applications rely on the use of several of these techniques in order to extract the most significant aspects of an image so they can help in some tasks such as image retrieval, image registration, object recognition, object categorization and texture classification, among others. In this paper we define what Feature Detection and Description are and then we present an extensive collection of several methods in order to show the different techniques that are being used right now. The aim of this report is to provide a glimpse of what is being used currently in these fields and to serve as a starting point for future endeavours.
Address
Corporate Author Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area (down) 800 Expedition Conference
Notes MV;SIAI Approved no
Call Number Admin @ si @ BVS2010; IAM @ iam @ BVS2010 Serial 1348
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Author Jorge Bernal; F. Javier Sanchez; Fernando Vilariño
Title Reduction of Pattern Search Area in Colonoscopy Images by Merging Non-Informative Regions Type Conference Article
Year 2010 Publication 28th Congreso Anual de la Sociedad Española de Ingeniería Biomédica Abbreviated Journal
Volume Issue Pages
Keywords
Abstract One of the first usual steps in pattern recognition schemas is image segmentation, in order to reduce the dimensionality of the problem and manage smaller quantity of data. In our case as we are pursuing real-time colon cancer polyp detection, this step is crucial. In this paper we present a non-informative region estimation algorithm that will let us discard some parts of the image where we will not expect to find colon cancer polyps. The performance of our approach will be measured in terms of both non-informative areas elimination and polyps’ areas preserving. The results obtained show the importance of having correct non- informative region estimation in order to fasten the whole recognition process.
Address Madrid (Spain)
Corporate Author Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area (down) 800 Expedition Conference CASEIB
Notes MV;SIAI Approved no
Call Number Admin @ si @ BSV2010 Serial 1469
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Author Jorge Bernal
Title Use of Projection and Back-projection Methods in Bidimensional Computed Tomography Image Reconstruction Type Report
Year 2009 Publication CVC Tecnical Report Abbreviated Journal
Volume 141 Issue Pages
Keywords Projection, Back-projection, CT scan, Euclidean geometry, Radon transform
Abstract One of the biggest drawbacks related to the use of CT scanners is the cost (in memory and in time) associated. In this project many methods to simulate their functioning, but in a more feasible way (taking an industrial point of view), will be studied.
The main group of techniques that are being used are the one entitled as ’back-projection’. The concept behind is to simulate the X ray emission in CT scans by lines that cross with the image we want to reconstruct.
In the first part of this document euclidean geometry is used to face the tasks of projec- tion and back-projection. After analysing the results achieved it has been proved that this approach does not lead to a fully perfect reconstruction (and also has some other problems related to running time and memory cost). Because of this in the second part of the document ’Filtered Back-projection’ method is introduced in order to improve the results.
Filtered Back-projection methods rely on mathematical transforms (Fourier, Radon) in order to provide more accurate results that can be obtained in much less time. The main cause of this better results is the use of a filtering process before the back-projection in order to avoid high frequency-caused errors.
As a result of this project two different implementations (one for each approach) had been implemented in order to compare their performance.
Address
Corporate Author Computer Vision Center Thesis Master's thesis
Publisher Place of Publication Barcelona, Spain Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area (down) 800 Expedition Conference
Notes MV; Approved no
Call Number IAM @ iam @ Ber2009 Serial 1693
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Author Jorge Bernal; F. Javier Sanchez; Fernando Vilariño
Title Current Challenges on Polyp Detection in Colonoscopy Videos: From Region Segmentation to Region Classification. a Pattern Recognition-based Approach.ased Approach Type Conference Article
Year 2011 Publication 2nd International Workshop on Medical Image Analysis and Descriptionfor Diagnosis Systems Abbreviated Journal
Volume Issue Pages 62-71
Keywords Medical Imaging, Colonoscopy, Pattern Recognition, Segmentation, Polyp Detection, Region Description, Machine Learning, Real-time.
Abstract In this paper we present our approach on real-time polyp detection in colonoscopy videos. Our method consists of three stages: Image Segmentation, Region Description and Image Classification. Taking into account the constraints of our project, we introduce our segmentation system that is based on the model of appearance of the polyp that we have defined after observing real videos from colonoscopy processes. The output of this stage will ideally be a low number of regions of which one of them should cover the whole polyp region (if there is one in the image). This regions will be described in terms of features and, as a result of a machine learning schema, classified based on the values that they have for the several features that we will use on their description. Although we are still on the early stages of the project, we present some preliminary segmentation results that indicates that we are going in a good direction.
Address Rome, Italy
Corporate Author Thesis
Publisher SciTePress Place of Publication Editor Djemal, Khalifa
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area (down) 800 Expedition Conference MIAD
Notes MV;SIAI Approved no
Call Number IAM @ iam @ BSV2011a Serial 1695
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Author Jorge Bernal; F. Javier Sanchez; Fernando Vilariño
Title A Region Segmentation Method for Colonoscopy Images Using a Model of Polyp Appearance Type Conference Article
Year 2011 Publication 5th Iberian Conference on Pattern Recognition and Image Analysis Abbreviated Journal
Volume 6669 Issue Pages 134-143   
Keywords Colonoscopy, Polyp Detection, Region Merging, Region Segmentation.
Abstract This work aims at the segmentation of colonoscopy images into a minimum number of informative regions. Our method performs in a way such, if a polyp is present in the image, it will be exclusively and totally contained in a single region. This result can be used in later stages to classify regions as polyp-containing candidates. The output of the algorithm also defines which regions can be considered as non-informative. The algorithm starts with a high number of initial regions and merges them taking into account the model of polyp appearance obtained from available data. The results show that our segmentations of polyp regions are more accurate than state-of-the-art methods.
Address Las Palmas de Gran Canaria, June 2011
Corporate Author SpringerLink Thesis
Publisher Place of Publication Editor Vitrià, Jordi and Sanches, João and Hernández, Mario
Language Summary Language Original Title
Series Editor Series Title Lecture Notes in Computer Science Abbreviated Series Title LNCS
Series Volume Series Issue Edition
ISSN ISBN 978-3-642-21256-7 Medium
Area (down) 800 Expedition Conference IbPRIA
Notes MV;SIAI Approved no
Call Number IAM @ iam @ BSV2011c Serial 1696
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Author Jorge Bernal; Fernando Vilariño; F. Javier Sanchez
Title Towards Intelligent Systems for Colonoscopy Type Book Chapter
Year 2011 Publication Colonoscopy Abbreviated Journal
Volume 1 Issue Pages 257-282
Keywords
Abstract In this chapter we present tools that can be used to build intelligent systems for colonoscopy.
The idea is, by using methods based on computer vision and artificial intelligence, add significant value to the colonoscopy procedure. Intelligent systems are being used to assist in other medical interventions
Address
Corporate Author Thesis
Publisher Intech Place of Publication Editor Paul Miskovitz
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN 978-953-307-568-6 Medium
Area (down) 800 Expedition Conference
Notes MV;SIAI Approved no
Call Number IAM @ iam @ BVS2011 Serial 1697
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Author Jorge Bernal; F. Javier Sanchez; Fernando Vilariño
Title Integration of Valley Orientation Distribution for Polyp Region Identification in Colonoscopy Type Conference Article
Year 2011 Publication In MICCAI 2011 Workshop on Computational and Clinical Applications in Abdominal Imaging Abbreviated Journal
Volume 6668 Issue Pages 76-83
Keywords
Abstract This work presents a region descriptor based on the integration of the information that the depth of valleys image provides. The depth of valleys image is based on the presence of intensity valleys around polyps due to the image acquisition. Our proposed method consists of defining, for each point, a series of radial sectors around it and then accumulates the maxima of the depth of valleys image only if the orientation of the intensity valley coincides with the orientation of the sector above. We apply our descriptor to a prior segmentation of the images and we present promising results on polyp detection, outperforming other approaches that also integrate depth of valleys information.
Address Toronto, Canada
Corporate Author Thesis
Publisher Springer Link Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Lecture Notes in Computer Science Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area (down) 800 Expedition Conference ABI
Notes MV;SIAI Approved no
Call Number IAM @ iam @ BSV2011d Serial 1698
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Author Jorge Bernal; F. Javier Sanchez; Fernando Vilariño
Title Depth of Valleys Accumulation Algorithm for Object Detection Type Conference Article
Year 2011 Publication 14th Congrès Català en Intel·ligencia Artificial Abbreviated Journal
Volume 1 Issue 1 Pages 71-80
Keywords Object Recognition, Object Region Identification, Image Analysis, Image Processing
Abstract This work aims at detecting in which regions the objects in the image are by using information about the intensity of valleys, which appear to surround ob- jects in images where the source of light is in the line of direction than the camera. We present our depth of valleys accumulation method, which consists of two stages: first, the definition of the depth of valleys image which combines the output of a ridges and valleys detector with the morphological gradient to measure how deep is a point inside a valley and second, an algorithm that denotes points of the image as interior to objects those which are inside complete or incomplete boundaries in the depth of valleys image. To evaluate the performance of our method we have tested it on several application domains. Our results on object region identification are promising, specially in the field of polyp detection in colonoscopy videos, and we also show its applicability in different areas.
Address Lleida
Corporate Author Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN 978-1-60750-841-0 Medium
Area (down) 800 Expedition Conference CCIA
Notes MV;SIAI Approved no
Call Number IAM @ iam @ BSV2011b Serial 1699
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Author Fernando Vilariño; Panagiota Spyridonos; Petia Radeva; Jordi Vitria; Fernando Azpiroz; Juan Malagelada
Title Method for automatic classification of in vivo images Type Patent
Year 2010 Publication US 2010/0046816 Abbreviated Journal
Volume Issue Pages
Keywords
Abstract A method for automatically detecting a post-duodenal boundary in an image stream of the gastrointestinal (GI) tract. The image stream is sampled to obtain a reduced set of images for processing. The reduced set of images is filtered to remove non-valid frames or non-valid portions of frames, thereby generating a filtered set of valid images. A polar representation of the valid images is generated. Textural features of the polar representation are processed to detect the post-duodenal boundary of the GI tract.
Address
Corporate Author Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area (down) 800 Expedition Conference
Notes MV;OR;MILAB;SIAI Approved no
Call Number IAM @ iam @ VSR2010 Serial 1702
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Author Gerard Lacey; Fernando Vilariño
Title Endoscopy system with motion sensors Type Patent
Year 2011 Publication US 2011/0032347 A1 Abbreviated Journal
Volume Issue Pages
Keywords
Abstract An endoscopy system (1) comprises an endoscope (2) with a camera (3) at its tip. The endoscope extends through an endoscope guide (4) for guiding movement of the endoscope and for measurement of its movement as it enters the body. The guide (4) comprises a generally conical body (5) having a through passage (105) through which the endoscope (2) extends. A motion sensor comprises an optical transmitter (7) and a detector (8) mounted alongside the passage (105) to measure the insertion-withdrawal linear motion and also rotation of the endoscope by the endoscopist's hand. The system (1) also comprises a flexure controller (10) having wheels operated by the endoscopist. The camera (3), the motion sensor (7/8), and the flexure controller (10) are all connected to a processor (11) which feeds a display.
Address Jacobson Holman PPLC; 400 Seventh Street, N.W. Suite 600; Whashington DC 20004 DC
Corporate Author USPTO Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area (down) 800 Expedition Conference
Notes MV;SIAI Approved no
Call Number IAM @ iam @ LaV2011 Serial 1703
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Author Fernando Vilariño; Panagiota Spyridonos; Petia Radeva; Jordi Vitria; Fernando Azpiroz; Juan Malagelada
Title Device, system and method for measurement and analysis of contractile activity Type Patent
Year 2009 Publication US 2009/0202117 A1 Abbreviated Journal
Volume Issue Pages
Keywords
Abstract A method and system for determining intestinal dysfunction condition are provided by classifying and analyzing image frames captured in-vivo. The method and system also relate to the detection of contractile activity in intestinal tracts, to automatic detection of video image frames taken in the gastrointestinal tract including contractile activity, and more particularly to measurement and analysis of contractile activity of the GI tract based on image intensity of in vivo image data.
Address Pearl Cohen Zedek Latzer
Corporate Author Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area (down) 800 Expedition Conference
Notes MV;OR;MILAB;SIAI Approved no
Call Number IAM @ iam @ VSR2009 Serial 1704
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Author Farhan Riaz; Fernando Vilariño; Mario Dinis-Ribeiro; Miguel Coimbraln
Title Identifying Potentially Cancerous Tissues in Chromoendoscopy Images Type Conference Article
Year 2011 Publication 5th Iberian Conference on Pattern Recognition and Image Analysis Abbreviated Journal
Volume 6669 Issue Pages 709-716
Keywords Endoscopy, Computer Assisted Diagnosis, Gradient.
Abstract The dynamics of image acquisition conditions for gastroenterology imaging scenarios pose novel challenges for automatic computer assisted decision systems. Such systems should have the ability to mimic the tissue characterization of the physicians. In this paper, our objective is to compare some feature extraction methods to classify a Chromoendoscopy image into two different classes: Normal and Potentially cancerous. Results show that LoG filters generally give best classification accuracy among the other feature extraction methods considered.
Address Las Palmas de Gran Canaria. Spain
Corporate Author Thesis
Publisher Springer Place of Publication Berlin Editor J. Vitria, J.M. Sanches, and M. Hernandez
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title LNCS
Series Volume Series Issue Edition
ISSN ISBN 978-3-642-21256-7 Medium
Area (down) 800 Expedition Conference IbPRIA
Notes MV;SIAI Approved no
Call Number Admin @ si @ RVD2011; IAM @ iam @ RVD2011 Serial 1726
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Author Carles Sanchez;F. Javier Sanchez; Antoni Rosell; Debora Gil
Title An illumination model of the trachea appearance in videobronchoscopy images Type Book Chapter
Year 2012 Publication Image Analysis and Recognition Abbreviated Journal LNCS
Volume 7325 Issue Pages 313-320
Keywords Bronchoscopy, tracheal ring, stenosis assesment, trachea appearance model, segmentation
Abstract Videobronchoscopy is a medical imaging technique that allows interactive navigation inside the respiratory pathways. This imaging modality provides realistic images and allows non-invasive minimal intervention procedures. Tracheal procedures are routinary interventions that require assessment of the percentage of obstructed pathway for injury (stenosis) detection. Visual assessment in videobronchoscopic sequences requires high expertise of trachea anatomy and is prone to human error.
This paper introduces an automatic method for the estimation of steneosed trachea percentage reduction in videobronchoscopic images. We look for tracheal rings , whose deformation determines the degree of obstruction. For ring extraction , we present a ring detector based on an illumination and appearance model. This model allows us to parametrise the ring detection. Finally, we can infer optimal estimation parameters for any video resolution.
Address Aveiro, Portugal
Corporate Author Thesis
Publisher Springer Berlin Heidelberg Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Lecture Notes in Computer Science Abbreviated Series Title LNCS
Series Volume Series Issue Edition
ISSN 0302-9743 ISBN 978-3-642-31297-7 Medium
Area (down) 800 Expedition Conference ICIAR
Notes MV;IAM Approved no
Call Number IAM @ iam @ SSR2012 Serial 1898
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