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Patricia Suarez, Angel Sappa, & Boris X. Vintimilla. (2021). Deep learning-based vegetation index estimation. In A.Solanki, A.Nayyar, & M.Naved (Eds.), Generative Adversarial Networks for Image-to-Image Translation (pp. 205–234). Elsevier.
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Hannes Mueller, Andre Groeger, Jonathan Hersh, Andrea Matranga, & Joan Serrat. (2021). Monitoring war destruction from space using machine learning. PNAS - Proceedings of the National Academy of Sciences of the United States of America, 118(23), e2025400118.
Abstract: Existing data on building destruction in conflict zones rely on eyewitness reports or manual detection, which makes it generally scarce, incomplete, and potentially biased. This lack of reliable data imposes severe limitations for media reporting, humanitarian relief efforts, human-rights monitoring, reconstruction initiatives, and academic studies of violent conflict. This article introduces an automated method of measuring destruction in high-resolution satellite images using deep-learning techniques combined with label augmentation and spatial and temporal smoothing, which exploit the underlying spatial and temporal structure of destruction. As a proof of concept, we apply this method to the Syrian civil war and reconstruct the evolution of damage in major cities across the country. Our approach allows generating destruction data with unprecedented scope, resolution, and frequency—and makes use of the ever-higher frequency at which satellite imagery becomes available.
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Zhengying Liu, Adrien Pavao, Zhen Xu, Sergio Escalera, Fabio Ferreira, Isabelle Guyon, et al. (2021). Winning Solutions and Post-Challenge Analyses of the ChaLearn AutoDL Challenge 2019. TPAMI - IEEE Transactions on Pattern Analysis and Machine Intelligence, 43(9), 3108–3125.
Abstract: This paper reports the results and post-challenge analyses of ChaLearn's AutoDL challenge series, which helped sorting out a profusion of AutoML solutions for Deep Learning (DL) that had been introduced in a variety of settings, but lacked fair comparisons. All input data modalities (time series, images, videos, text, tabular) were formatted as tensors and all tasks were multi-label classification problems. Code submissions were executed on hidden tasks, with limited time and computational resources, pushing solutions that get results quickly. In this setting, DL methods dominated, though popular Neural Architecture Search (NAS) was impractical. Solutions relied on fine-tuned pre-trained networks, with architectures matching data modality. Post-challenge tests did not reveal improvements beyond the imposed time limit. While no component is particularly original or novel, a high level modular organization emerged featuring a “meta-learner”, “data ingestor”, “model selector”, “model/learner”, and “evaluator”. This modularity enabled ablation studies, which revealed the importance of (off-platform) meta-learning, ensembling, and efficient data management. Experiments on heterogeneous module combinations further confirm the (local) optimality of the winning solutions. Our challenge legacy includes an ever-lasting benchmark (http://autodl.chalearn.org), the open-sourced code of the winners, and a free “AutoDL self-service.”
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Xim Cerda-Company, Olivier Penacchio, & Xavier Otazu. (2021). Chromatic Induction in Migraine. VISION, 37.
Abstract: The human visual system is not a colorimeter. The perceived colour of a region does not only depend on its colour spectrum, but also on the colour spectra and geometric arrangement of neighbouring regions, a phenomenon called chromatic induction. Chromatic induction is thought to be driven by lateral interactions: the activity of a central neuron is modified by stimuli outside its classical receptive field through excitatory–inhibitory mechanisms. As there is growing evidence of an excitation/inhibition imbalance in migraine, we compared chromatic induction in migraine and control groups. As hypothesised, we found a difference in the strength of induction between the two groups, with stronger induction effects in migraine. On the other hand, given the increased prevalence of visual phenomena in migraine with aura, we also hypothesised that the difference between migraine and control would be more important in migraine with aura than in migraine without aura. Our experiments did not support this hypothesis. Taken together, our results suggest a link between excitation/inhibition imbalance and increased induction effects.
Keywords: migraine; vision; colour; colour perception; chromatic induction; psychophysics
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Sonia Baeza, R.Domingo, M.Salcedo, G.Moragas, J.Deportos, I.Garcia Olive, et al. (2021). Artificial Intelligence to Optimize Pulmonary Embolism Diagnosis During Covid-19 Pandemic by Perfusion SPECT/CT, a Pilot Study. American Journal of Respiratory and Critical Care Medicine, .
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Mireia Sole, Joan Blanco, Debora Gil, Oliver Valero, Alvaro Pascual, B. Cardenas, et al. (2021). Chromosomal positioning in spermatogenic cells is influenced by chromosomal factors associated with gene activity, bouquet formation, and meiotic sex-chromosome inactivation. Chromosoma, 130, 163–175.
Abstract: Chromosome territoriality is not random along the cell cycle and it is mainly governed by intrinsic chromosome factors and gene expression patterns. Conversely, very few studies have explored the factors that determine chromosome territoriality and its influencing factors during meiosis. In this study, we analysed chromosome positioning in murine spermatogenic cells using three-dimensionally fluorescence in situ hybridization-based methodology, which allows the analysis of the entire karyotype. The main objective of the study was to decipher chromosome positioning in a radial axis (all analysed germ-cell nuclei) and longitudinal axis (only spermatozoa) and to identify the chromosomal factors that regulate such an arrangement. Results demonstrated that the radial positioning of chromosomes during spermatogenesis was cell-type specific and influenced by chromosomal factors associated to gene activity. Chromosomes with specific features that enhance transcription (high GC content, high gene density and high numbers of predicted expressed genes) were preferentially observed in the inner part of the nucleus in virtually all cell types. Moreover, the position of the sex chromosomes was influenced by their transcriptional status, from the periphery of the nucleus when its activity was repressed (pachytene) to a more internal position when it is partially activated (spermatid). At pachytene, chromosome positioning was also influenced by chromosome size due to the bouquet formation. Longitudinal chromosome positioning in the sperm nucleus was not random either, suggesting the importance of ordered longitudinal positioning for the release and activation of the paternal genome after fertilisation.
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Marta Ligero, Alonso Garcia Ruiz, Cristina Viaplana, Guillermo Villacampa, Maria V Raciti, Jaid Landa, et al. (2021). A CT-based radiomics signature is associated with response to immune checkpoint inhibitors in advanced solid tumors. Radiology, 299(1), 109–119.
Abstract: Background Reliable predictive imaging markers of response to immune checkpoint inhibitors are needed. Purpose To develop and validate a pretreatment CT-based radiomics signature to predict response to immune checkpoint inhibitors in advanced solid tumors. Materials and Methods In this retrospective study, a radiomics signature was developed in patients with advanced solid tumors (including breast, cervix, gastrointestinal) treated with anti-programmed cell death-1 or programmed cell death ligand-1 monotherapy from August 2012 to May 2018 (cohort 1). This was tested in patients with bladder and lung cancer (cohorts 2 and 3). Radiomics variables were extracted from all metastases delineated at pretreatment CT and selected by using an elastic-net model. A regression model combined radiomics and clinical variables with response as the end point. Biologic validation of the radiomics score with RNA profiling of cytotoxic cells (cohort 4) was assessed with Mann-Whitney analysis. Results The radiomics signature was developed in 85 patients (cohort 1: mean age, 58 years ± 13 [standard deviation]; 43 men) and tested on 46 patients (cohort 2: mean age, 70 years ± 12; 37 men) and 47 patients (cohort 3: mean age, 64 years ± 11; 40 men). Biologic validation was performed in a further cohort of 20 patients (cohort 4: mean age, 60 years ± 13; 14 men). The radiomics signature was associated with clinical response to immune checkpoint inhibitors (area under the curve [AUC], 0.70; 95% CI: 0.64, 0.77; P < .001). In cohorts 2 and 3, the AUC was 0.67 (95% CI: 0.58, 0.76) and 0.67 (95% CI: 0.56, 0.77; P < .001), respectively. A radiomics-clinical signature (including baseline albumin level and lymphocyte count) improved on radiomics-only performance (AUC, 0.74 [95% CI: 0.63, 0.84; P < .001]; Akaike information criterion, 107.00 and 109.90, respectively). Conclusion A pretreatment CT-based radiomics signature is associated with response to immune checkpoint inhibitors, likely reflecting the tumor immunophenotype. © RSNA, 2021 Online supplemental material is available for this article. See also the editorial by Summers in this issue.
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Debora Gil, Oriol Ramos Terrades, & Raquel Perez. (2021). Topological Radiomics (TOPiomics): Early Detection of Genetic Abnormalities in Cancer Treatment Evolution. In Extended Abstracts GEOMVAP 2019, Trends in Mathematics 15 (Vol. 15, 89–93). Springer Nature.
Abstract: Abnormalities in radiomic measures correlate to genomic alterations prone to alter the outcome of personalized anti-cancer treatments. TOPiomics is a new method for the early detection of variations in tumor imaging phenotype from a topological structure in multi-view radiomic spaces.
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Trevor Canham, Javier Vazquez, Elise Mathieu, & Marcelo Bertalmío. (2021). Matching visual induction effects on screens of different size. JOV - Journal of Vision, 21(6(10)), 1–22.
Abstract: In the film industry, the same movie is expected to be watched on displays of vastly different sizes, from cinema screens to mobile phones. But visual induction, the perceptual phenomenon by which the appearance of a scene region is affected by its surroundings, will be different for the same image shown on two displays of different dimensions. This phenomenon presents a practical challenge for the preservation of the artistic intentions of filmmakers, because it can lead to shifts in image appearance between viewing destinations. In this work, we show that a neural field model based on the efficient representation principle is able to predict induction effects and how, by regularizing its associated energy functional, the model is still able to represent induction but is now invertible. From this finding, we propose a method to preprocess an image in a screen–size dependent way so that its perception, in terms of visual induction, may remain constant across displays of different size. The potential of the method is demonstrated through psychophysical experiments on synthetic images and qualitative examples on natural images.
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Pau Riba, Andreas Fischer, Josep Llados, & Alicia Fornes. (2021). Learning graph edit distance by graph neural networks. PR - Pattern Recognition, 120, 108132.
Abstract: The emergence of geometric deep learning as a novel framework to deal with graph-based representations has faded away traditional approaches in favor of completely new methodologies. In this paper, we propose a new framework able to combine the advances on deep metric learning with traditional approximations of the graph edit distance. Hence, we propose an efficient graph distance based on the novel field of geometric deep learning. Our method employs a message passing neural network to capture the graph structure, and thus, leveraging this information for its use on a distance computation. The performance of the proposed graph distance is validated on two different scenarios. On the one hand, in a graph retrieval of handwritten words i.e. keyword spotting, showing its superior performance when compared with (approximate) graph edit distance benchmarks. On the other hand, demonstrating competitive results for graph similarity learning when compared with the current state-of-the-art on a recent benchmark dataset.
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Lei Kang, Pau Riba, Marcal Rusinol, Alicia Fornes, & Mauricio Villegas. (2021). Content and Style Aware Generation of Text-line Images for Handwriting Recognition. TPAMI - IEEE Transactions on Pattern Analysis and Machine Intelligence, .
Abstract: Handwritten Text Recognition has achieved an impressive performance in public benchmarks. However, due to the high inter- and intra-class variability between handwriting styles, such recognizers need to be trained using huge volumes of manually labeled training data. To alleviate this labor-consuming problem, synthetic data produced with TrueType fonts has been often used in the training loop to gain volume and augment the handwriting style variability. However, there is a significant style bias between synthetic and real data which hinders the improvement of recognition performance. To deal with such limitations, we propose a generative method for handwritten text-line images, which is conditioned on both visual appearance and textual content. Our method is able to produce long text-line samples with diverse handwriting styles. Once properly trained, our method can also be adapted to new target data by only accessing unlabeled text-line images to mimic handwritten styles and produce images with any textual content. Extensive experiments have been done on making use of the generated samples to boost Handwritten Text Recognition performance. Both qualitative and quantitative results demonstrate that the proposed approach outperforms the current state of the art.
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Lluis Gomez, Ali Furkan Biten, Ruben Tito, Andres Mafla, Marçal Rusiñol, Ernest Valveny, et al. (2021). Multimodal grid features and cell pointers for scene text visual question answering. PRL - Pattern Recognition Letters, 150, 242–249.
Abstract: This paper presents a new model for the task of scene text visual question answering. In this task questions about a given image can only be answered by reading and understanding scene text. Current state of the art models for this task make use of a dual attention mechanism in which one attention module attends to visual features while the other attends to textual features. A possible issue with this is that it makes difficult for the model to reason jointly about both modalities. To fix this problem we propose a new model that is based on an single attention mechanism that attends to multi-modal features conditioned to the question. The output weights of this attention module over a grid of multi-modal spatial features are interpreted as the probability that a certain spatial location of the image contains the answer text to the given question. Our experiments demonstrate competitive performance in two standard datasets with a model that is faster than previous methods at inference time. Furthermore, we also provide a novel analysis of the ST-VQA dataset based on a human performance study. Supplementary material, code, and data is made available through this link.
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Minesh Mathew, Lluis Gomez, Dimosthenis Karatzas, & C.V. Jawahar. (2021). Asking questions on handwritten document collections. IJDAR - International Journal on Document Analysis and Recognition, 24, 235–249.
Abstract: This work addresses the problem of Question Answering (QA) on handwritten document collections. Unlike typical QA and Visual Question Answering (VQA) formulations where the answer is a short text, we aim to locate a document snippet where the answer lies. The proposed approach works without recognizing the text in the documents. We argue that the recognition-free approach is suitable for handwritten documents and historical collections where robust text recognition is often difficult. At the same time, for human users, document image snippets containing answers act as a valid alternative to textual answers. The proposed approach uses an off-the-shelf deep embedding network which can project both textual words and word images into a common sub-space. This embedding bridges the textual and visual domains and helps us retrieve document snippets that potentially answer a question. We evaluate results of the proposed approach on two new datasets: (i) HW-SQuAD: a synthetic, handwritten document image counterpart of SQuAD1.0 dataset and (ii) BenthamQA: a smaller set of QA pairs defined on documents from the popular Bentham manuscripts collection. We also present a thorough analysis of the proposed recognition-free approach compared to a recognition-based approach which uses text recognized from the images using an OCR. Datasets presented in this work are available to download at docvqa.org.
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Ruben Tito, Dimosthenis Karatzas, & Ernest Valveny. (2021). Document Collection Visual Question Answering. In 16th International Conference on Document Analysis and Recognition (Vol. 12822, pp. 778–792). LNCS.
Abstract: Current tasks and methods in Document Understanding aims to process documents as single elements. However, documents are usually organized in collections (historical records, purchase invoices), that provide context useful for their interpretation. To address this problem, we introduce Document Collection Visual Question Answering (DocCVQA) a new dataset and related task, where questions are posed over a whole collection of document images and the goal is not only to provide the answer to the given question, but also to retrieve the set of documents that contain the information needed to infer the answer. Along with the dataset we propose a new evaluation metric and baselines which provide further insights to the new dataset and task.
Keywords: Document collection; Visual Question Answering
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Giovanni Maria Farinella, Petia Radeva, Jose Braz, & Kadi Bouatouch. (2021). Proceedings of the 16th International Joint Conference on Computer Vision, Imaging and Computer Graphics Theory and Applications (Volume 4) (Vol. 4).
Abstract: This book contains the proceedings of the 16th International Joint Conference on Computer Vision, Imaging and Computer Graphics Theory and Applications (VISIGRAPP 2021) which was organized and sponsored by the Institute for Systems and Technologies of Information, Control and Communication (INSTICC), endorsed by the International Association for Pattern Recognition (IAPR), and in cooperation with the ACM Special Interest Group on Graphics and Interactive Techniques (SIGGRAPH), the European Association for Computer Graphics (EUROGRAPHICS), the EUROGRAPHICS Portuguese Chapter, the VRVis Center for Virtual Reality and Visualization Forschungs-GmbH, the French Association for Computer Graphics (AFIG), and the Society for Imaging Science and Technology (IS&T). The proceedings here published demonstrate new and innovative solutions and highlight technical problems in each field that are challenging and worthy of being disseminated to the interested research audiences. VISIGRAPP 2021 was organized to promote a discussion forum about the conference’s research topics between researchers, developers, manufacturers and end-users, and to establish guidelines in the development of more advanced solutions. This year VISIGRAPP was, exceptionally, held as a web-based event, due to the COVID-19 pandemic, from 8 – 10 February. We received a high number of paper submissions for this edition of VISIGRAPP, 371 in total, with contributions from 52 countries. This attests to the success and global dimension of VISIGRAPP. To evaluate each submission, we used a hierarchical process of double-blind evaluation where each paper was reviewed by two to six experts from the International Program Committee (IPC). The IPC selected for oral presentation and for publication as full papers 12 papers from GRAPP, 8 from HUCAPP, 11 papers from IVAPP, and 56 papers from VISAPP, which led to a result for the full-paper acceptance ratio of 24% and a high-quality program. Apart from the above full papers, the conference program also features 118 short papers and 67 poster presentations. We hope that these conference proceedings, which are submitted for indexation by Thomson Reuters Conference Proceedings Citation Index, SCOPUS, DBLP, Semantic Scholar, Google Scholar, EI and Microsoft Academic, will help the Computer Vision, Imaging, Visualization, Computer Graphics and Human-Computer Interaction communities to find interesting research work. Moreover, we are proud to inform that the program also includes three plenary keynote lectures, given by internationally distinguished researchers, namely Federico Tombari (Google and Technical University of Munich, Germany), Dieter Schmalstieg (Graz University of Technology, Austria) and Nathalie Henry Riche (Microsoft Research, United States), thus contributing to increase the overall quality of the conference and to provide a deeper understanding of the conference’s interest fields. Furthermore, a short list of the presented papers will be selected to be extended into a forthcoming book of VISIGRAPP Selected Papers to be published by Springer during 2021 in the CCIS series. Moreover, a short list of presented papers will be selected for publication of extended and revised versions in a special issue of the Springer Nature Computer Science journal. All papers presented at this conference will be available at the SCITEPRESS Digital Library. Three awards are delivered at the closing session, to recognize the best conference paper, the best student paper and the best poster for each of the four conferences. There is also an award for best industrial paper to be delivered at the closing session for VISAPP. We would like to express our thanks, first of all, to the authors of the technical papers, whose work and dedication made it possible to put together a program that we believe to be very exciting and of high technical quality. Next, we would like to thank the Area Chairs, all the members of the program committee and auxiliary reviewers, who helped us with their expertise and time. We would also like to thank the invited speakers for their invaluable contribution and for sharing their vision in their talks. Finally, we gratefully acknowledge the professional support of the INSTICC team for all organizational processes, especially given the need to introduce online streaming, forum management, direct messaging facilitation and other web-based activities in order to make it possible for VISIGRAPP 2021 authors to present their work and share ideas with colleagues in spite of the logistic difficulties caused by the current pandemic situation. We wish you all an exciting conference. We hope to meet you again for the next edition of VISIGRAPP, details of which are available at http://www. visigrapp.org
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