Olivier Penacchio, Xavier Otazu, & Laura Dempere-Marco. (2013). A Neurodynamical Model of Brightness Induction in V1. Plos - PloS ONE, 8(5), e64086.
Abstract: Brightness induction is the modulation of the perceived intensity of an area by the luminance of surrounding areas. Recent neurophysiological evidence suggests that brightness information might be explicitly represented in V1, in contrast to the more common assumption that the striate cortex is an area mostly responsive to sensory information. Here we investigate possible neural mechanisms that offer a plausible explanation for such phenomenon. To this end, a neurodynamical model which is based on neurophysiological evidence and focuses on the part of V1 responsible for contextual influences is presented. The proposed computational model successfully accounts for well known psychophysical effects for static contexts and also for brightness induction in dynamic contexts defined by modulating the luminance of surrounding areas. This work suggests that intra-cortical interactions in V1 could, at least partially, explain brightness induction effects and reveals how a common general architecture may account for several different fundamental processes, such as visual saliency and brightness induction, which emerge early in the visual processing pathway.
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Pedro Martins, Paulo Carvalho, & Carlo Gatta. (2016). On the completeness of feature-driven maximally stable extremal regions. PRL - Pattern Recognition Letters, 74, 9–16.
Abstract: By definition, local image features provide a compact representation of the image in which most of the image information is preserved. This capability offered by local features has been overlooked, despite being relevant in many application scenarios. In this paper, we analyze and discuss the performance of feature-driven Maximally Stable Extremal Regions (MSER) in terms of the coverage of informative image parts (completeness). This type of features results from an MSER extraction on saliency maps in which features related to objects boundaries or even symmetry axes are highlighted. These maps are intended to be suitable domains for MSER detection, allowing this detector to provide a better coverage of informative image parts. Our experimental results, which were based on a large-scale evaluation, show that feature-driven MSER have relatively high completeness values and provide more complete sets than a traditional MSER detection even when sets of similar cardinality are considered.
Keywords: Local features; Completeness; Maximally Stable Extremal Regions
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Jose Manuel Alvarez, & Antonio Lopez. (2011). Road Detection Based on Illuminant Invariance. TITS - IEEE Transactions on Intelligent Transportation Systems, 12(1), 184–193.
Abstract: By using an onboard camera, it is possible to detect the free road surface ahead of the ego-vehicle. Road detection is of high relevance for autonomous driving, road departure warning, and supporting driver-assistance systems such as vehicle and pedestrian detection. The key for vision-based road detection is the ability to classify image pixels as belonging or not to the road surface. Identifying road pixels is a major challenge due to the intraclass variability caused by lighting conditions. A particularly difficult scenario appears when the road surface has both shadowed and nonshadowed areas. Accordingly, we propose a novel approach to vision-based road detection that is robust to shadows. The novelty of our approach relies on using a shadow-invariant feature space combined with a model-based classifier. The model is built online to improve the adaptability of the algorithm to the current lighting and the presence of other vehicles in the scene. The proposed algorithm works in still images and does not depend on either road shape or temporal restrictions. Quantitative and qualitative experiments on real-world road sequences with heavy traffic and shadows show that the method is robust to shadows and lighting variations. Moreover, the proposed method provides the highest performance when compared with hue-saturation-intensity (HSI)-based algorithms.
Keywords: road detection
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Francesc Carreras, Jaume Garcia, Debora Gil, Sandra Pujadas, Chi ho Lion, R.Suarez-Arias, et al. (2012). Left ventricular torsion and longitudinal shortening: two fundamental components of myocardial mechanics assessed by tagged cine-MRI in normal subjects. IJCI - International Journal of Cardiovascular Imaging, 28(2), 273–284.
Abstract: Cardiac magnetic resonance imaging (Cardiac MRI) has become a gold standard diagnostic technique for the assessment of cardiac mechanics, allowing the non-invasive calculation of left ventric- ular long axis longitudinal shortening (LVLS) and absolute myocardial torsion (AMT) between basal and apical left ventricular slices, a movement directly related to the helicoidal anatomic disposition of the myocardial fibers. The aim of this study is to determine AMT and LVLS behaviour and normal values from a group of healthy subjects. A group of 21 healthy volunteers (15 males) (age: 23–55 y.o., mean:30.7 ± 7.5) were prospectively included in an obser- vational study by Cardiac MRI. Left ventricular rotation (degrees) was calculated by custom-made software (Harmonic Phase Flow) in consecutive LV short axis planes tagged cine-MRI sequences. AMT was determined from the difference between basal and apical planes LV rotations. LVLS (%) was determined from the LV longitudinal and horizontal axis cine-MRI images. All the 21 cases studied were interpretable, although in three cases the value of the LV apical rotation could not be determined. The mean rotation of the basal and apical planes at end-systole were -3.71° ± 0.84° and 6.73° ± 1.69° (n:18) respectively, resulting in a LV mean AMT of 10.48° ± 1.63° (n:18). End-systolic mean LVLS was 19.07 ± 2.71%. Cardiac MRI allows for the calculation of AMT and LVLS, fundamental functional components of the ventricular twist mechanics conditioned, in turn, by the anatomical helical layout of the myocardial fibers. These values provide complementary information about systolic ventricular function in relation to the traditional parameters used in daily practice.
Keywords: Magnetic resonance imaging (MRI); Tagging MRI; Cardiac mechanics; Ventricular torsion
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Ivan Huerta, Marco Pedersoli, Jordi Gonzalez, & Alberto Sanfeliu. (2015). Combining where and what in change detection for unsupervised foreground learning in surveillance. PR - Pattern Recognition, 48(3), 709–719.
Abstract: Change detection is the most important task for video surveillance analytics such as foreground and anomaly detection. Current foreground detectors learn models from annotated images since the goal is to generate a robust foreground model able to detect changes in all possible scenarios. Unfortunately, manual labelling is very expensive. Most advanced supervised learning techniques based on generic object detection datasets currently exhibit very poor performance when applied to surveillance datasets because of the unconstrained nature of such environments in terms of types and appearances of objects. In this paper, we take advantage of change detection for training multiple foreground detectors in an unsupervised manner. We use statistical learning techniques which exploit the use of latent parameters for selecting the best foreground model parameters for a given scenario. In essence, the main novelty of our proposed approach is to combine the where (motion segmentation) and what (learning procedure) in change detection in an unsupervised way for improving the specificity and generalization power of foreground detectors at the same time. We propose a framework based on latent support vector machines that, given a noisy initialization based on motion cues, learns the correct position, aspect ratio, and appearance of all moving objects in a particular scene. Specificity is achieved by learning the particular change detections of a given scenario, and generalization is guaranteed since our method can be applied to any possible scene and foreground object, as demonstrated in the experimental results outperforming the state-of-the-art.
Keywords: Object detection; Unsupervised learning; Motion segmentation; Latent variables; Support vector machine; Multiple appearance models; Video surveillance
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Karim Lekadir, Alfiia Galimzianova, Angels Betriu, Maria del Mar Vila, Laura Igual, Daniel L. Rubin, et al. (2017). A Convolutional Neural Network for Automatic Characterization of Plaque Composition in Carotid Ultrasound. J-BHI - IEEE Journal Biomedical and Health Informatics, 21(1), 48–55.
Abstract: Characterization of carotid plaque composition, more specifically the amount of lipid core, fibrous tissue, and calcified tissue, is an important task for the identification of plaques that are prone to rupture, and thus for early risk estimation of cardiovascular and cerebrovascular events. Due to its low costs and wide availability, carotid ultrasound has the potential to become the modality of choice for plaque characterization in clinical practice. However, its significant image noise, coupled with the small size of the plaques and their complex appearance, makes it difficult for automated techniques to discriminate between the different plaque constituents. In this paper, we propose to address this challenging problem by exploiting the unique capabilities of the emerging deep learning framework. More specifically, and unlike existing works which require a priori definition of specific imaging features or thresholding values, we propose to build a convolutional neural network (CNN) that will automatically extract from the images the information that is optimal for the identification of the different plaque constituents. We used approximately 90 000 patches extracted from a database of images and corresponding expert plaque characterizations to train and to validate the proposed CNN. The results of cross-validation experiments show a correlation of about 0.90 with the clinical assessment for the estimation of lipid core, fibrous cap, and calcified tissue areas, indicating the potential of deep learning for the challenging task of automatic characterization of plaque composition in carotid ultrasound.
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Mireia Sole, Joan Blanco, Debora Gil, Oliver Valero, Alvaro Pascual, B. Cardenas, et al. (2021). Chromosomal positioning in spermatogenic cells is influenced by chromosomal factors associated with gene activity, bouquet formation, and meiotic sex-chromosome inactivation. Chromosoma, 130, 163–175.
Abstract: Chromosome territoriality is not random along the cell cycle and it is mainly governed by intrinsic chromosome factors and gene expression patterns. Conversely, very few studies have explored the factors that determine chromosome territoriality and its influencing factors during meiosis. In this study, we analysed chromosome positioning in murine spermatogenic cells using three-dimensionally fluorescence in situ hybridization-based methodology, which allows the analysis of the entire karyotype. The main objective of the study was to decipher chromosome positioning in a radial axis (all analysed germ-cell nuclei) and longitudinal axis (only spermatozoa) and to identify the chromosomal factors that regulate such an arrangement. Results demonstrated that the radial positioning of chromosomes during spermatogenesis was cell-type specific and influenced by chromosomal factors associated to gene activity. Chromosomes with specific features that enhance transcription (high GC content, high gene density and high numbers of predicted expressed genes) were preferentially observed in the inner part of the nucleus in virtually all cell types. Moreover, the position of the sex chromosomes was influenced by their transcriptional status, from the periphery of the nucleus when its activity was repressed (pachytene) to a more internal position when it is partially activated (spermatid). At pachytene, chromosome positioning was also influenced by chromosome size due to the bouquet formation. Longitudinal chromosome positioning in the sperm nucleus was not random either, suggesting the importance of ordered longitudinal positioning for the release and activation of the paternal genome after fertilisation.
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Dena Bazazian, Raul Gomez, Anguelos Nicolaou, Lluis Gomez, Dimosthenis Karatzas, & Andrew Bagdanov. (2019). Fast: Facilitated and accurate scene text proposals through fcn guided pruning. PRL - Pattern Recognition Letters, 119, 112–120.
Abstract: Class-specific text proposal algorithms can efficiently reduce the search space for possible text object locations in an image. In this paper we combine the Text Proposals algorithm with Fully Convolutional Networks to efficiently reduce the number of proposals while maintaining the same recall level and thus gaining a significant speed up. Our experiments demonstrate that such text proposal approaches yield significantly higher recall rates than state-of-the-art text localization techniques, while also producing better-quality localizations. Our results on the ICDAR 2015 Robust Reading Competition (Challenge 4) and the COCO-text datasets show that, when combined with strong word classifiers, this recall margin leads to state-of-the-art results in end-to-end scene text recognition.
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Marina Alberti, Simone Balocco, Xavier Carrillo, J. Mauri, & Petia Radeva. (2013). Automatic non-rigid temporal alignment of IVUS sequences: method and quantitative validation. UMB - Ultrasound in Medicine and Biology, 39(9), 1698–712.
Abstract: Clinical studies on atherosclerosis regression/progression performed by intravascular ultrasound analysis would benefit from accurate alignment of sequences of the same patient before and after clinical interventions and at follow-up. In this article, a methodology for automatic alignment of intravascular ultrasound sequences based on the dynamic time warping technique is proposed. The non-rigid alignment is adapted to the specific task by applying it to multidimensional signals describing the morphologic content of the vessel. Moreover, dynamic time warping is embedded into a framework comprising a strategy to address partial overlapping between acquisitions and a term that regularizes non-physiologic temporal compression/expansion of the sequences. Extensive validation is performed on both synthetic and in vivo data. The proposed method reaches alignment errors of approximately 0.43 mm for pairs of sequences acquired during the same intervention phase and 0.77 mm for pairs of sequences acquired at successive intervention stages.
Keywords: Intravascular ultrasound; Dynamic time warping; Non-rigid alignment; Sequence matching; Partial overlapping strategy
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Joan Serrat, Felipe Lumbreras, & Idoia Ruiz. (2018). Learning to measure for preshipment garment sizing. MEASURE - Measurement, 130, 327–339.
Abstract: Clothing is still manually manufactured for the most part nowadays, resulting in discrepancies between nominal and real dimensions, and potentially ill-fitting garments. Hence, it is common in the apparel industry to manually perform measures at preshipment time. We present an automatic method to obtain such measures from a single image of a garment that speeds up this task. It is generic and extensible in the sense that it does not depend explicitly on the garment shape or type. Instead, it learns through a probabilistic graphical model to identify the different contour parts. Subsequently, a set of Lasso regressors, one per desired measure, can predict the actual values of the measures. We present results on a dataset of 130 images of jackets and 98 of pants, of varying sizes and styles, obtaining 1.17 and 1.22 cm of mean absolute error, respectively.
Keywords: Apparel; Computer vision; Structured prediction; Regression
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Chenyang Fu, Kaida Xiao, Dimosthenis Karatzas, & Sophie Wuerger. (2011). Investigation of Unique Hue Setting Changes with Ageing. COL - Chinese Optics Letters, 9(5), 053301-5.
Abstract: Clromatic sensitivity along the protan, deutan, and tritan lines and the loci of the unique hues (red, green, yellow, blue) for a very large sample (n = 185) of colour-normal observers ranging from 18 to 75 years of age are assessed. Visual judgments are obtained under normal viewing conditions using colour patches on self-luminous display under controlled adaptation conditions. Trivector discrimination thresholds show an increase as a function of age along the protan, deutan, and tritan axes, with the largest increase present along the tritan line, less pronounced shifts in unique hue settings are also observed. Based on the chromatic (protan, deutan, tritan) thresholds and using scaled cone signals, we predict the unique hue changes with ageing. A dependency on age for unique red and unique yellow for predicted hue angle is found. We conclude that the chromatic sensitivity deteriorates significantly with age, whereas the appearance of unique hues is much less affected, remaining almost constant despite the known changes in the ocular media.
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Adrien Pavao, Isabelle Guyon, Anne-Catherine Letournel, Dinh-Tuan Tran, Xavier Baro, Hugo Jair Escalante, et al. (2023). CodaLab Competitions: An Open Source Platform to Organize Scientific Challenges. JMLR - Journal of Machine Learning Research, .
Abstract: CodaLab Competitions is an open source web platform designed to help data scientists and research teams to crowd-source the resolution of machine learning problems through the organization of competitions, also called challenges or contests. CodaLab Competitions provides useful features such as multiple phases, results and code submissions, multi-score leaderboards, and jobs running
inside Docker containers. The platform is very flexible and can handle large scale experiments, by allowing organizers to upload large datasets and provide their own CPU or GPU compute workers.
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Daniela Rato, Miguel Oliveira, Vitor Santos, Manuel Gomes, & Angel Sappa. (2022). A sensor-to-pattern calibration framework for multi-modal industrial collaborative cells. JMANUFSYST - Journal of Manufacturing Systems, 64, 497–507.
Abstract: Collaborative robotic industrial cells are workspaces where robots collaborate with human operators. In this context, safety is paramount, and for that a complete perception of the space where the collaborative robot is inserted is necessary. To ensure this, collaborative cells are equipped with a large set of sensors of multiple modalities, covering the entire work volume. However, the fusion of information from all these sensors requires an accurate extrinsic calibration. The calibration of such complex systems is challenging, due to the number of sensors and modalities, and also due to the small overlapping fields of view between the sensors, which are positioned to capture different viewpoints of the cell. This paper proposes a sensor to pattern methodology that can calibrate a complex system such as a collaborative cell in a single optimization procedure. Our methodology can tackle RGB and Depth cameras, as well as LiDARs. Results show that our methodology is able to accurately calibrate a collaborative cell containing three RGB cameras, a depth camera and three 3D LiDARs.
Keywords: Calibration; Collaborative cell; Multi-modal; Multi-sensor
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Jorge Bernal, Nima Tajkbaksh, F. Javier Sanchez, Bogdan J. Matuszewski, Hao Chen, Lequan Yu, et al. (2017). Comparative Validation of Polyp Detection Methods in Video Colonoscopy: Results from the MICCAI 2015 Endoscopic Vision Challenge. TMI - IEEE Transactions on Medical Imaging, 36(6), 1231–1249.
Abstract: Colonoscopy is the gold standard for colon cancer screening though still some polyps are missed, thus preventing early disease detection and treatment. Several computational systems have been proposed to assist polyp detection during colonoscopy but so far without consistent evaluation. The lack
of publicly available annotated databases has made it difficult to compare methods and to assess if they achieve performance levels acceptable for clinical use. The Automatic Polyp Detection subchallenge, conducted as part of the Endoscopic Vision Challenge (http://endovis.grand-challenge.org) at the international conference on Medical Image Computing and Computer Assisted
Intervention (MICCAI) in 2015, was an effort to address this need. In this paper, we report the results of this comparative evaluation of polyp detection methods, as well as describe additional experiments to further explore differences between methods. We define performance metrics and provide evaluation databases that allow comparison of multiple methodologies. Results show that convolutional neural networks (CNNs) are the state of the art. Nevertheless it is also demonstrated that combining different methodologies can lead to an improved overall performance.
Keywords: Endoscopic vision; Polyp Detection; Handcrafted features; Machine Learning; Validation Framework
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C. Alejandro Parraga, Jordi Roca, & Maria Vanrell. (2011). Do Basic Colors Influence Chromatic Adaptation? VSS - Journal of Vision, 11(11), 85.
Abstract: Color constancy (the ability to perceive colors relatively stable under different illuminants) is the result of several mechanisms spread across different neural levels and responding to several visual scene cues. It is usually measured by estimating the perceived color of a grey patch under an illuminant change. In this work, we hypothesize whether chromatic adaptation (without a reference white or grey) could be driven by certain colors, specifically those corresponding to the universal color terms proposed by Berlin and Kay (1969). To this end we have developed a new psychophysical paradigm in which subjects adjust the color of a test patch (in CIELab space) to match their memory of the best example of a given color chosen from the universal terms list (grey, red, green, blue, yellow, purple, pink, orange and brown). The test patch is embedded inside a Mondrian image and presented on a calibrated CRT screen inside a dark cabin. All subjects were trained to “recall” their most exemplary colors reliably from memory and asked to always produce the same basic colors when required under several adaptation conditions. These include achromatic and colored Mondrian backgrounds, under a simulated D65 illuminant and several colored illuminants. A set of basic colors were measured for each subject under neutral conditions (achromatic background and D65 illuminant) and used as “reference” for the rest of the experiment. The colors adjusted by the subjects in each adaptation condition were compared to the reference colors under the corresponding illuminant and a “constancy index” was obtained for each of them. Our results show that for some colors the constancy index was better than for grey. The set of best adapted colors in each condition were common to a majority of subjects and were dependent on the chromaticity of the illuminant and the chromatic background considered.
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