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Author | Mireia Sole; Joan Blanco; Debora Gil; Oliver Valero; Alvaro Pascual; B. Cardenas; G. Fonseka; E. Anton; Richard Frodsham; Francesca Vidal; Zaida Sarrate | ||||
Title | Chromosomal positioning in spermatogenic cells is influenced by chromosomal factors associated with gene activity, bouquet formation, and meiotic sex-chromosome inactivation | Type | Journal Article | ||
Year | 2021 | Publication | Chromosoma | Abbreviated Journal | |
Volume | 130 | Issue | Pages | 163-175 | |
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Abstract ![]() |
Chromosome territoriality is not random along the cell cycle and it is mainly governed by intrinsic chromosome factors and gene expression patterns. Conversely, very few studies have explored the factors that determine chromosome territoriality and its influencing factors during meiosis. In this study, we analysed chromosome positioning in murine spermatogenic cells using three-dimensionally fluorescence in situ hybridization-based methodology, which allows the analysis of the entire karyotype. The main objective of the study was to decipher chromosome positioning in a radial axis (all analysed germ-cell nuclei) and longitudinal axis (only spermatozoa) and to identify the chromosomal factors that regulate such an arrangement. Results demonstrated that the radial positioning of chromosomes during spermatogenesis was cell-type specific and influenced by chromosomal factors associated to gene activity. Chromosomes with specific features that enhance transcription (high GC content, high gene density and high numbers of predicted expressed genes) were preferentially observed in the inner part of the nucleus in virtually all cell types. Moreover, the position of the sex chromosomes was influenced by their transcriptional status, from the periphery of the nucleus when its activity was repressed (pachytene) to a more internal position when it is partially activated (spermatid). At pachytene, chromosome positioning was also influenced by chromosome size due to the bouquet formation. Longitudinal chromosome positioning in the sperm nucleus was not random either, suggesting the importance of ordered longitudinal positioning for the release and activation of the paternal genome after fertilisation. | ||||
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Notes | IAM; 600.145 | Approved | no | ||
Call Number | Admin @ si @ SBG2021 | Serial | 3592 | ||
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Author | Dena Bazazian; Raul Gomez; Anguelos Nicolaou; Lluis Gomez; Dimosthenis Karatzas; Andrew Bagdanov | ||||
Title | Fast: Facilitated and accurate scene text proposals through fcn guided pruning | Type | Journal Article | ||
Year | 2019 | Publication | Pattern Recognition Letters | Abbreviated Journal | PRL |
Volume | 119 | Issue | Pages | 112-120 | |
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Abstract ![]() |
Class-specific text proposal algorithms can efficiently reduce the search space for possible text object locations in an image. In this paper we combine the Text Proposals algorithm with Fully Convolutional Networks to efficiently reduce the number of proposals while maintaining the same recall level and thus gaining a significant speed up. Our experiments demonstrate that such text proposal approaches yield significantly higher recall rates than state-of-the-art text localization techniques, while also producing better-quality localizations. Our results on the ICDAR 2015 Robust Reading Competition (Challenge 4) and the COCO-text datasets show that, when combined with strong word classifiers, this recall margin leads to state-of-the-art results in end-to-end scene text recognition. | ||||
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Notes | DAG; 600.084; 600.121; 600.129 | Approved | no | ||
Call Number | Admin @ si @ BGN2019 | Serial | 3342 | ||
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Author | Marina Alberti; Simone Balocco; Xavier Carrillo; J. Mauri; Petia Radeva | ||||
Title | Automatic non-rigid temporal alignment of IVUS sequences: method and quantitative validation | Type | Journal Article | ||
Year | 2013 | Publication | Ultrasound in Medicine and Biology | Abbreviated Journal | UMB |
Volume | 39 | Issue | 9 | Pages | 1698-712 |
Keywords | Intravascular ultrasound; Dynamic time warping; Non-rigid alignment; Sequence matching; Partial overlapping strategy | ||||
Abstract ![]() |
Clinical studies on atherosclerosis regression/progression performed by intravascular ultrasound analysis would benefit from accurate alignment of sequences of the same patient before and after clinical interventions and at follow-up. In this article, a methodology for automatic alignment of intravascular ultrasound sequences based on the dynamic time warping technique is proposed. The non-rigid alignment is adapted to the specific task by applying it to multidimensional signals describing the morphologic content of the vessel. Moreover, dynamic time warping is embedded into a framework comprising a strategy to address partial overlapping between acquisitions and a term that regularizes non-physiologic temporal compression/expansion of the sequences. Extensive validation is performed on both synthetic and in vivo data. The proposed method reaches alignment errors of approximately 0.43 mm for pairs of sequences acquired during the same intervention phase and 0.77 mm for pairs of sequences acquired at successive intervention stages. | ||||
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Notes | MILAB | Approved | no | ||
Call Number | Admin @ si @ ABC2013 | Serial | 2313 | ||
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Author | Joan Serrat; Felipe Lumbreras; Idoia Ruiz | ||||
Title | Learning to measure for preshipment garment sizing | Type | Journal Article | ||
Year | 2018 | Publication | Measurement | Abbreviated Journal | MEASURE |
Volume | 130 | Issue | Pages | 327-339 | |
Keywords | Apparel; Computer vision; Structured prediction; Regression | ||||
Abstract ![]() |
Clothing is still manually manufactured for the most part nowadays, resulting in discrepancies between nominal and real dimensions, and potentially ill-fitting garments. Hence, it is common in the apparel industry to manually perform measures at preshipment time. We present an automatic method to obtain such measures from a single image of a garment that speeds up this task. It is generic and extensible in the sense that it does not depend explicitly on the garment shape or type. Instead, it learns through a probabilistic graphical model to identify the different contour parts. Subsequently, a set of Lasso regressors, one per desired measure, can predict the actual values of the measures. We present results on a dataset of 130 images of jackets and 98 of pants, of varying sizes and styles, obtaining 1.17 and 1.22 cm of mean absolute error, respectively. | ||||
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Notes | ADAS; MSIAU; 600.122; 600.118 | Approved | no | ||
Call Number | Admin @ si @ SLR2018 | Serial | 3128 | ||
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Author | Chenyang Fu; Kaida Xiao; Dimosthenis Karatzas; Sophie Wuerger | ||||
Title | Investigation of Unique Hue Setting Changes with Ageing | Type | Journal Article | ||
Year | 2011 | Publication | Chinese Optics Letters | Abbreviated Journal | COL |
Volume | 9 | Issue | 5 | Pages | 053301-1-5 |
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Abstract ![]() |
Clromatic sensitivity along the protan, deutan, and tritan lines and the loci of the unique hues (red, green, yellow, blue) for a very large sample (n = 185) of colour-normal observers ranging from 18 to 75 years of age are assessed. Visual judgments are obtained under normal viewing conditions using colour patches on self-luminous display under controlled adaptation conditions. Trivector discrimination thresholds show an increase as a function of age along the protan, deutan, and tritan axes, with the largest increase present along the tritan line, less pronounced shifts in unique hue settings are also observed. Based on the chromatic (protan, deutan, tritan) thresholds and using scaled cone signals, we predict the unique hue changes with ageing. A dependency on age for unique red and unique yellow for predicted hue angle is found. We conclude that the chromatic sensitivity deteriorates significantly with age, whereas the appearance of unique hues is much less affected, remaining almost constant despite the known changes in the ocular media. | ||||
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Notes | DAG | Approved | no | ||
Call Number | Admin @ si @ XFW2011 | Serial | 1818 | ||
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Author | Adrien Pavao; Isabelle Guyon; Anne-Catherine Letournel; Dinh-Tuan Tran; Xavier Baro; Hugo Jair Escalante; Sergio Escalera; Tyler Thomas; Zhen Xu | ||||
Title | CodaLab Competitions: An Open Source Platform to Organize Scientific Challenges | Type | Journal Article | ||
Year | 2023 | Publication | Journal of Machine Learning Research | Abbreviated Journal | JMLR |
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Abstract ![]() |
CodaLab Competitions is an open source web platform designed to help data scientists and research teams to crowd-source the resolution of machine learning problems through the organization of competitions, also called challenges or contests. CodaLab Competitions provides useful features such as multiple phases, results and code submissions, multi-score leaderboards, and jobs running
inside Docker containers. The platform is very flexible and can handle large scale experiments, by allowing organizers to upload large datasets and provide their own CPU or GPU compute workers. |
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Notes | HUPBA | Approved | no | ||
Call Number | Admin @ si @ PGL2023 | Serial | 3973 | ||
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Author | Daniela Rato; Miguel Oliveira; Vitor Santos; Manuel Gomes; Angel Sappa | ||||
Title | A sensor-to-pattern calibration framework for multi-modal industrial collaborative cells | Type | Journal Article | ||
Year | 2022 | Publication | Journal of Manufacturing Systems | Abbreviated Journal | JMANUFSYST |
Volume | 64 | Issue | Pages | 497-507 | |
Keywords | Calibration; Collaborative cell; Multi-modal; Multi-sensor | ||||
Abstract ![]() |
Collaborative robotic industrial cells are workspaces where robots collaborate with human operators. In this context, safety is paramount, and for that a complete perception of the space where the collaborative robot is inserted is necessary. To ensure this, collaborative cells are equipped with a large set of sensors of multiple modalities, covering the entire work volume. However, the fusion of information from all these sensors requires an accurate extrinsic calibration. The calibration of such complex systems is challenging, due to the number of sensors and modalities, and also due to the small overlapping fields of view between the sensors, which are positioned to capture different viewpoints of the cell. This paper proposes a sensor to pattern methodology that can calibrate a complex system such as a collaborative cell in a single optimization procedure. Our methodology can tackle RGB and Depth cameras, as well as LiDARs. Results show that our methodology is able to accurately calibrate a collaborative cell containing three RGB cameras, a depth camera and three 3D LiDARs. | ||||
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Publisher | Science Direct | Place of Publication | Editor | ||
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Notes | MSIAU; MACO | Approved | no | ||
Call Number | Admin @ si @ ROS2022 | Serial | 3750 | ||
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Author | Jorge Bernal; Nima Tajkbaksh; F. Javier Sanchez; Bogdan J. Matuszewski; Hao Chen; Lequan Yu; Quentin Angermann; Olivier Romain; Bjorn Rustad; Ilangko Balasingham; Konstantin Pogorelov; Sungbin Choi; Quentin Debard; Lena Maier Hein; Stefanie Speidel; Danail Stoyanov; Patrick Brandao; Henry Cordova; Cristina Sanchez Montes; Suryakanth R. Gurudu; Gloria Fernandez Esparrach; Xavier Dray; Jianming Liang; Aymeric Histace | ||||
Title | Comparative Validation of Polyp Detection Methods in Video Colonoscopy: Results from the MICCAI 2015 Endoscopic Vision Challenge | Type | Journal Article | ||
Year | 2017 | Publication | IEEE Transactions on Medical Imaging | Abbreviated Journal | TMI |
Volume | 36 | Issue | 6 | Pages | 1231 - 1249 |
Keywords | Endoscopic vision; Polyp Detection; Handcrafted features; Machine Learning; Validation Framework | ||||
Abstract ![]() |
Colonoscopy is the gold standard for colon cancer screening though still some polyps are missed, thus preventing early disease detection and treatment. Several computational systems have been proposed to assist polyp detection during colonoscopy but so far without consistent evaluation. The lack
of publicly available annotated databases has made it difficult to compare methods and to assess if they achieve performance levels acceptable for clinical use. The Automatic Polyp Detection subchallenge, conducted as part of the Endoscopic Vision Challenge (http://endovis.grand-challenge.org) at the international conference on Medical Image Computing and Computer Assisted Intervention (MICCAI) in 2015, was an effort to address this need. In this paper, we report the results of this comparative evaluation of polyp detection methods, as well as describe additional experiments to further explore differences between methods. We define performance metrics and provide evaluation databases that allow comparison of multiple methodologies. Results show that convolutional neural networks (CNNs) are the state of the art. Nevertheless it is also demonstrated that combining different methodologies can lead to an improved overall performance. |
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Notes | MV; 600.096; 600.075 | Approved | no | ||
Call Number | Admin @ si @ BTS2017 | Serial | 2949 | ||
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Author | C. Alejandro Parraga; Jordi Roca; Maria Vanrell | ||||
Title | Do Basic Colors Influence Chromatic Adaptation? | Type | Journal Article | ||
Year | 2011 | Publication | Journal of Vision | Abbreviated Journal | VSS |
Volume | 11 | Issue | 11 | Pages | 85 |
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Abstract ![]() |
Color constancy (the ability to perceive colors relatively stable under different illuminants) is the result of several mechanisms spread across different neural levels and responding to several visual scene cues. It is usually measured by estimating the perceived color of a grey patch under an illuminant change. In this work, we hypothesize whether chromatic adaptation (without a reference white or grey) could be driven by certain colors, specifically those corresponding to the universal color terms proposed by Berlin and Kay (1969). To this end we have developed a new psychophysical paradigm in which subjects adjust the color of a test patch (in CIELab space) to match their memory of the best example of a given color chosen from the universal terms list (grey, red, green, blue, yellow, purple, pink, orange and brown). The test patch is embedded inside a Mondrian image and presented on a calibrated CRT screen inside a dark cabin. All subjects were trained to “recall” their most exemplary colors reliably from memory and asked to always produce the same basic colors when required under several adaptation conditions. These include achromatic and colored Mondrian backgrounds, under a simulated D65 illuminant and several colored illuminants. A set of basic colors were measured for each subject under neutral conditions (achromatic background and D65 illuminant) and used as “reference” for the rest of the experiment. The colors adjusted by the subjects in each adaptation condition were compared to the reference colors under the corresponding illuminant and a “constancy index” was obtained for each of them. Our results show that for some colors the constancy index was better than for grey. The set of best adapted colors in each condition were common to a majority of subjects and were dependent on the chromaticity of the illuminant and the chromatic background considered. | ||||
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ISSN | 1534-7362 | ISBN | Medium | ||
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Notes | CIC | Approved | no | ||
Call Number | Admin @ si @ PRV2011 | Serial | 1759 | ||
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Author | Jordi Roca; C. Alejandro Parraga; Maria Vanrell | ||||
Title | Chromatic settings and the structural color constancy index | Type | Journal Article | ||
Year | 2013 | Publication | Journal of Vision | Abbreviated Journal | JV |
Volume | 13 | Issue | 4-3 | Pages | 1-26 |
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Abstract ![]() |
Color constancy is usually measured by achromatic setting, asymmetric matching, or color naming paradigms, whose results are interpreted in terms of indexes and models that arguably do not capture the full complexity of the phenomenon. Here we propose a new paradigm, chromatic setting, which allows a more comprehensive characterization of color constancy through the measurement of multiple points in color space under immersive adaptation. We demonstrated its feasibility by assessing the consistency of subjects' responses over time. The paradigm was applied to two-dimensional (2-D) Mondrian stimuli under three different illuminants, and the results were used to fit a set of linear color constancy models. The use of multiple colors improved the precision of more complex linear models compared to the popular diagonal model computed from gray. Our results show that a diagonal plus translation matrix that models mechanisms other than cone gain might be best suited to explain the phenomenon. Additionally, we calculated a number of color constancy indices for several points in color space, and our results suggest that interrelations among colors are not as uniform as previously believed. To account for this variability, we developed a new structural color constancy index that takes into account the magnitude and orientation of the chromatic shift in addition to the interrelations among colors and memory effects. | ||||
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Notes | CIC; 600.052; 600.051; 605.203 | Approved | no | ||
Call Number | Admin @ si @ RPV2013 | Serial | 2288 | ||
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Author | Lu Yu; Lichao Zhang; Joost Van de Weijer; Fahad Shahbaz Khan; Yongmei Cheng; C. Alejandro Parraga | ||||
Title | Beyond Eleven Color Names for Image Understanding | Type | Journal Article | ||
Year | 2018 | Publication | Machine Vision and Applications | Abbreviated Journal | MVAP |
Volume | 29 | Issue | 2 | Pages | 361-373 |
Keywords | Color name; Discriminative descriptors; Image classification; Re-identification; Tracking | ||||
Abstract ![]() |
Color description is one of the fundamental problems of image understanding. One of the popular ways to represent colors is by means of color names. Most existing work on color names focuses on only the eleven basic color terms of the English language. This could be limiting the discriminative power of these representations, and representations based on more color names are expected to perform better. However, there exists no clear strategy to choose additional color names. We collect a dataset of 28 additional color names. To ensure that the resulting color representation has high discriminative power we propose a method to order the additional color names according to their complementary nature with the basic color names. This allows us to compute color name representations with high discriminative power of arbitrary length. In the experiments we show that these new color name descriptors outperform the existing color name descriptor on the task of visual tracking, person re-identification and image classification. | ||||
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Notes | LAMP; NEUROBIT; 600.068; 600.109; 600.120 | Approved | no | ||
Call Number | Admin @ si @ YYW2018 | Serial | 3087 | ||
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Author | Xim Cerda-Company; Xavier Otazu | ||||
Title | Color induction in equiluminant flashed stimuli | Type | Journal Article | ||
Year | 2019 | Publication | Journal of the Optical Society of America A | Abbreviated Journal | JOSA A |
Volume | 36 | Issue | 1 | Pages | 22-31 |
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Abstract ![]() |
Color induction is the influence of the surrounding color (inducer) on the perceived color of a central region. There are two different types of color induction: color contrast (the color of the central region shifts away from that of the inducer) and color assimilation (the color shifts towards the color of the inducer). Several studies on these effects have used uniform and striped surrounds, reporting color contrast and color assimilation, respectively. Other authors [J. Vis. 12(1), 22 (2012) [CrossRef] ] have studied color induction using flashed uniform surrounds, reporting that the contrast is higher for shorter flash duration. Extending their study, we present new psychophysical results using both flashed and static (i.e., non-flashed) equiluminant stimuli for both striped and uniform surrounds. Similarly to them, for uniform surround stimuli we observed color contrast, but we did not obtain the maximum contrast for the shortest (10 ms) flashed stimuli, but for 40 ms. We only observed this maximum contrast for red, green, and lime inducers, while for a purple inducer we obtained an asymptotic profile along the flash duration. For striped stimuli, we observed color assimilation only for the static (infinite flash duration) red–green surround inducers (red first inducer, green second inducer). For the other inducers’ configurations, we observed color contrast or no induction. Since other studies showed that non-equiluminant striped static stimuli induce color assimilation, our results also suggest that luminance differences could be a key factor to induce it. | ||||
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Notes | NEUROBIT; 600.120; 600.128 | Approved | no | ||
Call Number | Admin @ si @ CeO2019 | Serial | 3226 | ||
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Author | Xavier Otazu; Xim Cerda-Company | ||||
Title | The contribution of luminance and chromatic channels to color assimilation | Type | Journal Article | ||
Year | 2022 | Publication | Journal of Vision | Abbreviated Journal | JOV |
Volume | 22(6) | Issue | 10 | Pages | 1-15 |
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Abstract ![]() |
Color induction is the phenomenon where the physical and the perceived colors of an object differ owing to the color distribution and the spatial configuration of the surrounding objects. Previous works studying this phenomenon on the lsY MacLeod–Boynton color space, show that color assimilation is present only when the magnocellular pathway (i.e., the Y axis) is activated (i.e., when there are luminance differences). Concretely, the authors showed that the effect is mainly induced by the koniocellular pathway (s axis), but not by the parvocellular pathway (l axis), suggesting that when magnocellular pathway is activated it inhibits the koniocellular pathway. In the present work, we study whether parvo-, konio-, and magnocellular pathways may influence on each other through the color induction effect. Our results show that color assimilation does not depend on a chromatic–chromatic interaction, and that chromatic assimilation is driven by the interaction between luminance and chromatic channels (mainly the magno- and the koniocellular pathways). Our results also show that chromatic induction is greatly decreased when all three visual pathways are simultaneously activated, and that chromatic pathways could influence each other through the magnocellular (luminance) pathway. In addition, we observe that chromatic channels can influence the luminance channel, hence inducing a small brightness induction. All these results show that color induction is a highly complex process where interactions between the several visual pathways are yet unknown and should be studied in greater detail. | ||||
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Notes | Neurobit; 600.128; 600.120; 600.158 | Approved | no | ||
Call Number | Admin @ si @ OtC2022 | Serial | 3685 | ||
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Author | Joost Van de Weijer; Cordelia Schmid; Jakob Verbeek; Diane Larlus | ||||
Title | Learning Color Names for Real-World Applications | Type | Journal Article | ||
Year | 2009 | Publication | IEEE Transaction in Image Processing | Abbreviated Journal | TIP |
Volume | 18 | Issue | 7 | Pages | 1512–1524 |
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Abstract ![]() |
Color names are required in real-world applications such as image retrieval and image annotation. Traditionally, they are learned from a collection of labelled color chips. These color chips are labelled with color names within a well-defined experimental setup by human test subjects. However naming colors in real-world images differs significantly from this experimental setting. In this paper, we investigate how color names learned from color chips compare to color names learned from real-world images. To avoid hand labelling real-world images with color names we use Google Image to collect a data set. Due to limitations of Google Image this data set contains a substantial quantity of wrongly labelled data. We propose several variants of the PLSA model to learn color names from this noisy data. Experimental results show that color names learned from real-world images significantly outperform color names learned from labelled color chips for both image retrieval and image annotation. | ||||
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ISSN | 1057-7149 | ISBN | Medium | ||
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Notes | Approved | no | |||
Call Number | CAT @ cat @ WSV2009 | Serial | 1195 | ||
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Author | David Vazquez; Jorge Bernal; F. Javier Sanchez; Gloria Fernandez Esparrach; Antonio Lopez; Adriana Romero; Michal Drozdzal; Aaron Courville | ||||
Title | A Benchmark for Endoluminal Scene Segmentation of Colonoscopy Images | Type | Journal Article | ||
Year | 2017 | Publication | Journal of Healthcare Engineering | Abbreviated Journal | JHCE |
Volume | Issue | Pages | 2040-2295 | ||
Keywords | Colonoscopy images; Deep Learning; Semantic Segmentation | ||||
Abstract ![]() |
Colorectal cancer (CRC) is the third cause of cancer death world-wide. Currently, the standard approach to reduce CRC-related mortality is to perform regular screening in search for polyps and colonoscopy is the screening tool of choice. The main limitations of this screening procedure are polyp miss- rate and inability to perform visual assessment of polyp malignancy. These drawbacks can be reduced by designing Decision Support Systems (DSS) aim- ing to help clinicians in the different stages of the procedure by providing endoluminal scene segmentation. Thus, in this paper, we introduce an extended benchmark of colonoscopy image segmentation, with the hope of establishing a new strong benchmark for colonoscopy image analysis research. The proposed dataset consists of 4 relevant classes to inspect the endolumninal scene, tar- geting different clinical needs. Together with the dataset and taking advantage of advances in semantic segmentation literature, we provide new baselines by training standard fully convolutional networks (FCN). We perform a compar- ative study to show that FCN significantly outperform, without any further post-processing, prior results in endoluminal scene segmentation, especially with respect to polyp segmentation and localization. | ||||
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Notes | ADAS; MV; 600.075; 600.085; 600.076; 601.281; 600.118 | Approved | no | ||
Call Number | VBS2017b | Serial | 2940 | ||
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