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Akhil Gurram; Ahmet Faruk Tuna; Fengyi Shen; Onay Urfalioglu; Antonio Lopez |
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Title |
Monocular Depth Estimation through Virtual-world Supervision and Real-world SfM Self-Supervision |
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Journal Article |
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2021 |
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IEEE Transactions on Intelligent Transportation Systems |
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TITS |
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23 |
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8 |
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12738-12751 |
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Depth information is essential for on-board perception in autonomous driving and driver assistance. Monocular depth estimation (MDE) is very appealing since it allows for appearance and depth being on direct pixelwise correspondence without further calibration. Best MDE models are based on Convolutional Neural Networks (CNNs) trained in a supervised manner, i.e., assuming pixelwise ground truth (GT). Usually, this GT is acquired at training time through a calibrated multi-modal suite of sensors. However, also using only a monocular system at training time is cheaper and more scalable. This is possible by relying on structure-from-motion (SfM) principles to generate self-supervision. Nevertheless, problems of camouflaged objects, visibility changes, static-camera intervals, textureless areas, and scale ambiguity, diminish the usefulness of such self-supervision. In this paper, we perform monocular depth estimation by virtual-world supervision (MonoDEVS) and real-world SfM self-supervision. We compensate the SfM self-supervision limitations by leveraging virtual-world images with accurate semantic and depth supervision and addressing the virtual-to-real domain gap. Our MonoDEVSNet outperforms previous MDE CNNs trained on monocular and even stereo sequences. |
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ADAS; 600.118 |
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Admin @ si @ GTS2021 |
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3598 |
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Ahmed M. A. Salih; Ilaria Boscolo Galazzo; Zahra Zahra Raisi-Estabragh; Steffen E. Petersen; Polyxeni Gkontra; Karim Lekadir; Gloria Menegaz; Petia Radeva |
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A new scheme for the assessment of the robustness of Explainable Methods Applied to Brain Age estimation |
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Conference Article |
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2021 |
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34th International Symposium on Computer-Based Medical Systems |
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492-497 |
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Deep learning methods show great promise in a range of settings including the biomedical field. Explainability of these models is important in these fields for building end-user trust and to facilitate their confident deployment. Although several Machine Learning Interpretability tools have been proposed so far, there is currently no recognized evaluation standard to transfer the explainability results into a quantitative score. Several measures have been proposed as proxies for quantitative assessment of explainability methods. However, the robustness of the list of significant features provided by the explainability methods has not been addressed. In this work, we propose a new proxy for assessing the robustness of the list of significant features provided by two explainability methods. Our validation is defined at functionality-grounded level based on the ranked correlation statistical index and demonstrates its successful application in the framework of brain aging estimation. We assessed our proxy to estimate brain age using neuroscience data. Our results indicate small variability and high robustness in the considered explainability methods using this new proxy. |
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CBMS |
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MILAB; no proj |
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Admin @ si @ SBZ2021 |
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3629 |
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Javad Zolfaghari Bengar |
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Reducing Label Effort with Deep Active Learning |
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2021 |
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PhD Thesis, Universitat Autonoma de Barcelona-CVC |
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Deep convolutional neural networks (CNNs) have achieved superior performance in many visual recognition applications, such as image classification, detection and segmentation. Training deep CNNs requires huge amounts of labeled data, which is expensive and labor intensive to collect. Active learning is a paradigm aimed at reducing the annotation effort by training the model on actively selected
informative and/or representative samples. In this thesis we study several aspects of active learning including video object detection for autonomous driving systems, image classification on balanced and imbalanced datasets and the incorporation of self-supervised learning in active learning. We briefly describe our approach in each of these areas to reduce the labeling effort.
In chapter two we introduce a novel active learning approach for object detection in videos by exploiting temporal coherence. Our criterion is based on the estimated number of errors in terms of false positives and false negatives. Additionally, we introduce a synthetic video dataset, called SYNTHIA-AL, specially designed to evaluate active
learning for video object detection in road scenes. Finally, we show that our
approach outperforms active learning baselines tested on two outdoor datasets.
In the next chapter we address the well-known problem of over confidence in the neural networks. As an alternative to network confidence, we propose a new informativeness-based active learning method that captures the learning dynamics of neural network with a metric called label-dispersion. This metric is low when the network consistently assigns the same label to the sample during the course of training and high when the assigned label changes frequently. We show that label-dispersion is a promising predictor of the uncertainty of the network, and show on two benchmark datasets that an active learning algorithm based on label-dispersion obtains excellent results.
In chapter four, we tackle the problem of sampling bias in active learning methods on imbalanced datasets. Active learning is generally studied on balanced datasets where an equal amount of images per class is available. However, real-world datasets suffer from severe imbalanced classes, the so called longtail distribution. We argue that this further complicates the active learning process, since the imbalanced data pool can result in suboptimal classifiers. To address this problem in the context of active learning, we propose a general optimization framework that explicitly takes class-balancing into account. Results on three datasets show that the method is general (it can be combined with most existing active learning algorithms) and can be effectively applied to boost the performance of both informative and representative-based active learning methods. In addition, we show that also on balanced datasets our method generally results in a performance gain.
Another paradigm to reduce the annotation effort is self-training that learns from a large amount of unlabeled data in an unsupervised way and fine-tunes on few labeled samples. Recent advancements in self-training have achieved very impressive results rivaling supervised learning on some datasets. In the last chapter we focus on whether active learning and self supervised learning can benefit from each other.
We study object recognition datasets with several labeling budgets for the evaluations. Our experiments reveal that self-training is remarkably more efficient than active learning at reducing the labeling effort, that for a low labeling budget, active learning offers no benefit to self-training, and finally that the combination of active learning and self-training is fruitful when the labeling budget is high. |
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December 2021 |
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Ph.D. thesis |
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IMPRIMA |
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Joost Van de Weijer;Bogdan Raducanu |
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978-84-122714-9-2 |
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LAMP; |
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Admin @ si @ Zol2021 |
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3609 |
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Ruben Tito; Dimosthenis Karatzas; Ernest Valveny |
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Title |
Document Collection Visual Question Answering |
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Conference Article |
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2021 |
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16th International Conference on Document Analysis and Recognition |
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12822 |
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778-792 |
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Document collection; Visual Question Answering |
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Current tasks and methods in Document Understanding aims to process documents as single elements. However, documents are usually organized in collections (historical records, purchase invoices), that provide context useful for their interpretation. To address this problem, we introduce Document Collection Visual Question Answering (DocCVQA) a new dataset and related task, where questions are posed over a whole collection of document images and the goal is not only to provide the answer to the given question, but also to retrieve the set of documents that contain the information needed to infer the answer. Along with the dataset we propose a new evaluation metric and baselines which provide further insights to the new dataset and task. |
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ICDAR |
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DAG; 600.121 |
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Admin @ si @ TKV2021 |
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3622 |
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Domicele Jonauskaite; Lucia Camenzind; C. Alejandro Parraga; Cecile N Diouf; Mathieu Mercapide Ducommun; Lauriane Müller; Melanie Norberg; Christine Mohr |
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Colour-emotion associations in individuals with red-green colour blindness |
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Journal Article |
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2021 |
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PeerJ |
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9 |
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e11180 |
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Affect; Chromotherapy; Colour cognition; Colour vision deficiency; Cross-modal correspondences; Daltonism; Deuteranopia; Dichromatic; Emotion; Protanopia. |
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Colours and emotions are associated in languages and traditions. Some of us may convey sadness by saying feeling blue or by wearing black clothes at funerals. The first example is a conceptual experience of colour and the second example is an immediate perceptual experience of colour. To investigate whether one or the other type of experience more strongly drives colour-emotion associations, we tested 64 congenitally red-green colour-blind men and 66 non-colour-blind men. All participants associated 12 colours, presented as terms or patches, with 20 emotion concepts, and rated intensities of the associated emotions. We found that colour-blind and non-colour-blind men associated similar emotions with colours, irrespective of whether colours were conveyed via terms (r = .82) or patches (r = .80). The colour-emotion associations and the emotion intensities were not modulated by participants' severity of colour blindness. Hinting at some additional, although minor, role of actual colour perception, the consistencies in associations for colour terms and patches were higher in non-colour-blind than colour-blind men. Together, these results suggest that colour-emotion associations in adults do not require immediate perceptual colour experiences, as conceptual experiences are sufficient. |
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CIC; LAMP; 600.120; 600.128 |
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Admin @ si @ JCP2021 |
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3564 |
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Mireia Sole; Joan Blanco; Debora Gil; Oliver Valero; Alvaro Pascual; B. Cardenas; G. Fonseka; E. Anton; Richard Frodsham; Francesca Vidal; Zaida Sarrate |
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Chromosomal positioning in spermatogenic cells is influenced by chromosomal factors associated with gene activity, bouquet formation, and meiotic sex-chromosome inactivation |
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2021 |
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Chromosoma |
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130 |
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163-175 |
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Chromosome territoriality is not random along the cell cycle and it is mainly governed by intrinsic chromosome factors and gene expression patterns. Conversely, very few studies have explored the factors that determine chromosome territoriality and its influencing factors during meiosis. In this study, we analysed chromosome positioning in murine spermatogenic cells using three-dimensionally fluorescence in situ hybridization-based methodology, which allows the analysis of the entire karyotype. The main objective of the study was to decipher chromosome positioning in a radial axis (all analysed germ-cell nuclei) and longitudinal axis (only spermatozoa) and to identify the chromosomal factors that regulate such an arrangement. Results demonstrated that the radial positioning of chromosomes during spermatogenesis was cell-type specific and influenced by chromosomal factors associated to gene activity. Chromosomes with specific features that enhance transcription (high GC content, high gene density and high numbers of predicted expressed genes) were preferentially observed in the inner part of the nucleus in virtually all cell types. Moreover, the position of the sex chromosomes was influenced by their transcriptional status, from the periphery of the nucleus when its activity was repressed (pachytene) to a more internal position when it is partially activated (spermatid). At pachytene, chromosome positioning was also influenced by chromosome size due to the bouquet formation. Longitudinal chromosome positioning in the sperm nucleus was not random either, suggesting the importance of ordered longitudinal positioning for the release and activation of the paternal genome after fertilisation. |
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IAM; 600.145 |
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Admin @ si @ SBG2021 |
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3592 |
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Patricia Suarez; Angel Sappa; Boris X. Vintimilla |
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Deep learning-based vegetation index estimation |
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2021 |
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Generative Adversarial Networks for Image-to-Image Translation |
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205-234 |
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Chapter 9 |
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Elsevier |
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A.Solanki; A.Nayyar; M.Naved |
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MSIAU; 600.122 |
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Admin @ si @ SSV2021a |
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3578 |
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Diana Ramirez Cifuentes; Ana Freire; Ricardo Baeza Yates; Nadia Sanz Lamora; Aida Alvarez; Alexandre Gonzalez; Meritxell Lozano; Roger Llobet; Diego Velazquez; Josep M. Gonfaus; Jordi Gonzalez |
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Characterization of Anorexia Nervosa on Social Media: Textual, Visual, Relational, Behavioral, and Demographical Analysis |
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2021 |
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Journal of Medical Internet Research |
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JMIR |
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23 |
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7 |
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e25925 |
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Background: Eating disorders are psychological conditions characterized by unhealthy eating habits. Anorexia nervosa (AN) is defined as the belief of being overweight despite being dangerously underweight. The psychological signs involve emotional and behavioral issues. There is evidence that signs and symptoms can manifest on social media, wherein both harmful and beneficial content is shared daily. |
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ISE |
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Admin @ si @ RFB2021 |
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3665 |
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Marta Ligero; Alonso Garcia Ruiz; Cristina Viaplana; Guillermo Villacampa; Maria V Raciti; Jaid Landa; Ignacio Matos; Juan Martin Liberal; Maria Ochoa de Olza; Cinta Hierro; Joaquin Mateo; Macarena Gonzalez; Rafael Morales Barrera; Cristina Suarez; Jordi Rodon; Elena Elez; Irene Braña; Eva Muñoz-Couselo; Ana Oaknin; Roberta Fasani; Paolo Nuciforo; Debora Gil; Carlota Rubio Perez; Joan Seoane; Enriqueta Felip; Manuel Escobar; Josep Tabernero; Joan Carles; Rodrigo Dienstmann; Elena Garralda; Raquel Perez Lopez |
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A CT-based radiomics signature is associated with response to immune checkpoint inhibitors in advanced solid tumors |
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Journal Article |
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2021 |
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Radiology |
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299 |
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1 |
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109-119 |
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Background Reliable predictive imaging markers of response to immune checkpoint inhibitors are needed. Purpose To develop and validate a pretreatment CT-based radiomics signature to predict response to immune checkpoint inhibitors in advanced solid tumors. Materials and Methods In this retrospective study, a radiomics signature was developed in patients with advanced solid tumors (including breast, cervix, gastrointestinal) treated with anti-programmed cell death-1 or programmed cell death ligand-1 monotherapy from August 2012 to May 2018 (cohort 1). This was tested in patients with bladder and lung cancer (cohorts 2 and 3). Radiomics variables were extracted from all metastases delineated at pretreatment CT and selected by using an elastic-net model. A regression model combined radiomics and clinical variables with response as the end point. Biologic validation of the radiomics score with RNA profiling of cytotoxic cells (cohort 4) was assessed with Mann-Whitney analysis. Results The radiomics signature was developed in 85 patients (cohort 1: mean age, 58 years ± 13 [standard deviation]; 43 men) and tested on 46 patients (cohort 2: mean age, 70 years ± 12; 37 men) and 47 patients (cohort 3: mean age, 64 years ± 11; 40 men). Biologic validation was performed in a further cohort of 20 patients (cohort 4: mean age, 60 years ± 13; 14 men). The radiomics signature was associated with clinical response to immune checkpoint inhibitors (area under the curve [AUC], 0.70; 95% CI: 0.64, 0.77; P < .001). In cohorts 2 and 3, the AUC was 0.67 (95% CI: 0.58, 0.76) and 0.67 (95% CI: 0.56, 0.77; P < .001), respectively. A radiomics-clinical signature (including baseline albumin level and lymphocyte count) improved on radiomics-only performance (AUC, 0.74 [95% CI: 0.63, 0.84; P < .001]; Akaike information criterion, 107.00 and 109.90, respectively). Conclusion A pretreatment CT-based radiomics signature is associated with response to immune checkpoint inhibitors, likely reflecting the tumor immunophenotype. © RSNA, 2021 Online supplemental material is available for this article. See also the editorial by Summers in this issue. |
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IAM; 600.145 |
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Admin @ si @ LGV2021 |
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3593 |
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Giuseppe Pezzano; Vicent Ribas Ripoll; Petia Radeva |
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CoLe-CNN: Context-learning convolutional neural network with adaptive loss function for lung nodule segmentation |
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2021 |
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Computer Methods and Programs in Biomedicine |
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CMPB |
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198 |
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105792 |
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Background and objective:An accurate segmentation of lung nodules in computed tomography images is a crucial step for the physical characterization of the tumour. Being often completely manually accomplished, nodule segmentation turns to be a tedious and time-consuming procedure and this represents a high obstacle in clinical practice. In this paper, we propose a novel Convolutional Neural Network for nodule segmentation that combines a light and efficient architecture with innovative loss function and segmentation strategy. Methods:In contrast to most of the standard end-to-end architectures for nodule segmentation, our network learns the context of the nodules by producing two masks representing all the background and secondary-important elements in the Computed Tomography scan. The nodule is detected by subtracting the context from the original scan image. Additionally, we introduce an asymmetric loss function that automatically compensates for potential errors in the nodule annotations. We trained and tested our Neural Network on the public LIDC-IDRI database, compared it with the state of the art and run a pseudo-Turing test between four radiologists and the network. Results:The results proved that the behaviour of the algorithm is very near to the human performance and its segmentation masks are almost indistinguishable from the ones made by the radiologists. Our method clearly outperforms the state of the art on CT nodule segmentation in terms of F1 score and IoU of and respectively. Conclusions: The main structure of the network ensures all the properties of the UNet architecture, while the Multi Convolutional Layers give a more accurate pattern recognition. The newly adopted solutions also increase the details on the border of the nodule, even under the noisiest conditions. This method can be applied now for single CT slice nodule segmentation and it represents a starting point for the future development of a fully automatic 3D segmentation software. |
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MILAB; no proj |
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Admin @ si @ PRR2021 |
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3530 |
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O.F.Ahmad; Y.Mori; M.Misawa; S.Kudo; J.T.Anderson; Jorge Bernal |
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Establishing key research questions for the implementation of artificial intelligence in colonoscopy: a modified Delphi method |
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2021 |
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Endoscopy |
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END |
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53 |
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9 |
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893-901 |
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BACKGROUND : Artificial intelligence (AI) research in colonoscopy is progressing rapidly but widespread clinical implementation is not yet a reality. We aimed to identify the top implementation research priorities. METHODS : An established modified Delphi approach for research priority setting was used. Fifteen international experts, including endoscopists and translational computer scientists/engineers, from nine countries participated in an online survey over 9 months. Questions related to AI implementation in colonoscopy were generated as a long-list in the first round, and then scored in two subsequent rounds to identify the top 10 research questions. RESULTS : The top 10 ranked questions were categorized into five themes. Theme 1: clinical trial design/end points (4 questions), related to optimum trial designs for polyp detection and characterization, determining the optimal end points for evaluation of AI, and demonstrating impact on interval cancer rates. Theme 2: technological developments (3 questions), including improving detection of more challenging and advanced lesions, reduction of false-positive rates, and minimizing latency. Theme 3: clinical adoption/integration (1 question), concerning the effective combination of detection and characterization into one workflow. Theme 4: data access/annotation (1 question), concerning more efficient or automated data annotation methods to reduce the burden on human experts. Theme 5: regulatory approval (1 question), related to making regulatory approval processes more efficient. CONCLUSIONS : This is the first reported international research priority setting exercise for AI in colonoscopy. The study findings should be used as a framework to guide future research with key stakeholders to accelerate the clinical implementation of AI in endoscopy. |
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Admin @ si @ AMM2021 |
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3670 |
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Fatemeh Noroozi; Ciprian Corneanu; Dorota Kamińska; Tomasz Sapiński; Sergio Escalera; Gholamreza Anbarjafari |
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Survey on Emotional Body Gesture Recognition |
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2021 |
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IEEE Transactions on Affective Computing |
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TAC |
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12 |
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2 |
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505 - 523 |
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Automatic emotion recognition has become a trending research topic in the past decade. While works based on facial expressions or speech abound, recognizing affect from body gestures remains a less explored topic. We present a new comprehensive survey hoping to boost research in the field. We first introduce emotional body gestures as a component of what is commonly known as “body language” and comment general aspects as gender differences and culture dependence. We then define a complete framework for automatic emotional body gesture recognition. We introduce person detection and comment static and dynamic body pose estimation methods both in RGB and 3D. We then comment the recent literature related to representation learning and emotion recognition from images of emotionally expressive gestures. We also discuss multi-modal approaches that combine speech or face with body gestures for improved emotion recognition. While pre-processing methodologies (e.g. human detection and pose estimation) are nowadays mature technologies fully developed for robust large scale analysis, we show that for emotion recognition the quantity of labelled data is scarce, there is no agreement on clearly defined output spaces and the representations are shallow and largely based on naive geometrical representations. |
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Admin @ si @ NCK2021 |
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3657 |
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Carola Figueroa Flores; Bogdan Raducanu; David Berga; Joost Van de Weijer |
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Hallucinating Saliency Maps for Fine-Grained Image Classification for Limited Data Domains |
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2021 |
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16th International Joint Conference on Computer Vision, Imaging and Computer Graphics Theory and Applications |
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163-171 |
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arXiv:2007.12562
Most of the saliency methods are evaluated on their ability to generate saliency maps, and not on their functionality in a complete vision pipeline, like for instance, image classification. In the current paper, we propose an approach which does not require explicit saliency maps to improve image classification, but they are learned implicitely, during the training of an end-to-end image classification task. We show that our approach obtains similar results as the case when the saliency maps are provided explicitely. Combining RGB data with saliency maps represents a significant advantage for object recognition, especially for the case when training data is limited. We validate our method on several datasets for fine-grained classification tasks (Flowers, Birds and Cars). In addition, we show that our saliency estimation method, which is trained without any saliency groundtruth data, obtains competitive results on real image saliency benchmark (Toronto), and outperforms deep saliency models with synthetic images (SID4VAM). |
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Virtual; February 2021 |
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VISAPP |
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Admin @ si @ FRB2021c |
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3540 |
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Javad Zolfaghari Bengar; Joost Van de Weijer; Bartlomiej Twardowski; Bogdan Raducanu |
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Reducing Label Effort: Self- Supervised Meets Active Learning |
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2021 |
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International Conference on Computer Vision Workshops |
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Active learning is a paradigm aimed at reducing the annotation effort by training the model on actively selected informative and/or representative samples. Another paradigm to reduce the annotation effort is self-training that learns from a large amount of unlabeled data in an unsupervised way and fine-tunes on few labeled samples. Recent developments in self-training have achieved very impressive results rivaling supervised learning on some datasets. The current work focuses on whether the two paradigms can benefit from each other. We studied object recognition datasets including CIFAR10, CIFAR100 and Tiny ImageNet with several labeling budgets for the evaluations. Our experiments reveal that self-training is remarkably more efficient than active learning at reducing the labeling effort, that for a low labeling budget, active learning offers no benefit to self-training, and finally that the combination of active learning and self-training is fruitful when the labeling budget is high. The performance gap between active learning trained either with self-training or from scratch diminishes as we approach to the point where almost half of the dataset is labeled. |
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October 2021 |
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ICCVW |
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Admin @ si @ ZVT2021 |
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3672 |
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Javad Zolfaghari Bengar; Bogdan Raducanu; Joost Van de Weijer |
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When Deep Learners Change Their Mind: Learning Dynamics for Active Learning |
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2021 |
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19th International Conference on Computer Analysis of Images and Patterns |
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13052 |
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1 |
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403-413 |
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Active learning aims to select samples to be annotated that yield the largest performance improvement for the learning algorithm. Many methods approach this problem by measuring the informativeness of samples and do this based on the certainty of the network predictions for samples. However, it is well-known that neural networks are overly confident about their prediction and are therefore an untrustworthy source to assess sample informativeness. In this paper, we propose a new informativeness-based active learning method. Our measure is derived from the learning dynamics of a neural network. More precisely we track the label assignment of the unlabeled data pool during the training of the algorithm. We capture the learning dynamics with a metric called label-dispersion, which is low when the network consistently assigns the same label to the sample during the training of the network and high when the assigned label changes frequently. We show that label-dispersion is a promising predictor of the uncertainty of the network, and show on two benchmark datasets that an active learning algorithm based on label-dispersion obtains excellent results. |
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September 2021 |
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CAIP |
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Admin @ si @ ZRV2021 |
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3673 |
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