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Sonia Baeza; Debora Gil; I.Garcia Olive; M.Salcedo; J.Deportos; Carles Sanchez; Guillermo Torres; G.Moragas; Antoni Rosell |
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Title |
A novel intelligent radiomic analysis of perfusion SPECT/CT images to optimize pulmonary embolism diagnosis in COVID-19 patients |
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Journal Article |
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2022 |
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EJNMMI Physics |
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EJNMMI-PHYS |
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9 |
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1, Article 84 |
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1-17 |
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Background: COVID-19 infection, especially in cases with pneumonia, is associated with a high rate of pulmonary embolism (PE). In patients with contraindications for CT pulmonary angiography (CTPA) or non-diagnostic CTPA, perfusion single-photon emission computed tomography/computed tomography (Q-SPECT/CT) is a diagnostic alternative. The goal of this study is to develop a radiomic diagnostic system to detect PE based only on the analysis of Q-SPECT/CT scans.
Methods: This radiomic diagnostic system is based on a local analysis of Q-SPECT/CT volumes that includes both CT and Q-SPECT values for each volume point. We present a combined approach that uses radiomic features extracted from each scan as input into a fully connected classifcation neural network that optimizes a weighted crossentropy loss trained to discriminate between three diferent types of image patterns (pixel sample level): healthy lungs (control group), PE and pneumonia. Four types of models using diferent confguration of parameters were tested.
Results: The proposed radiomic diagnostic system was trained on 20 patients (4,927 sets of samples of three types of image patterns) and validated in a group of 39 patients (4,410 sets of samples of three types of image patterns). In the training group, COVID-19 infection corresponded to 45% of the cases and 51.28% in the test group. In the test group, the best model for determining diferent types of image patterns with PE presented a sensitivity, specifcity, positive predictive value and negative predictive value of 75.1%, 98.2%, 88.9% and 95.4%, respectively. The best model for detecting
pneumonia presented a sensitivity, specifcity, positive predictive value and negative predictive value of 94.1%, 93.6%, 85.2% and 97.6%, respectively. The area under the curve (AUC) was 0.92 for PE and 0.91 for pneumonia. When the results obtained at the pixel sample level are aggregated into regions of interest, the sensitivity of the PE increases to 85%, and all metrics improve for pneumonia.
Conclusion: This radiomic diagnostic system was able to identify the diferent lung imaging patterns and is a frst step toward a comprehensive intelligent radiomic system to optimize the diagnosis of PE by Q-SPECT/CT. |
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5 dec 2022 |
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IAM |
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Admin @ si @ BGG2022 |
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3759 |
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Angel Sappa; David Geronimo; Fadi Dornaika; Antonio Lopez |
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Title |
On-board camera extrinsic parameter estimation |
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2006 |
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Electronics Letters |
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EL |
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42 |
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13 |
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745–746 |
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An efficient technique for real-time estimation of camera extrinsic parameters is presented. It is intended to be used on on-board vision systems for driving assistance applications. The proposed technique is based on the use of a commercial stereo vision system that does not need any visual feature extraction. |
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ADAS @ adas @ SGD2006a |
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655 |
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Andres Traumann; Gholamreza Anbarjafari; Sergio Escalera |
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Title |
Accurate 3D Measurement Using Optical Depth Information |
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Journal Article |
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2015 |
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Electronic Letters |
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EL |
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51 |
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18 |
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1420-1422 |
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A novel three-dimensional measurement technique is proposed. The methodology consists in mapping from the screen coordinates reported by the optical camera to the real world, and integrating distance gradients from the beginning to the end point, while also minimising the error through fitting pixel locations to a smooth curve. The results demonstrate accuracy of less than half a centimetre using Microsoft Kinect II. |
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HuPBA;MILAB |
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Admin @ si @ TAE2015 |
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2647 |
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Author |
Jorge Bernal |
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Title |
Polyp Localization and Segmentation in Colonoscopy Images by Means of a Model of Appearance for Polyps |
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Journal Article |
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2014 |
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Electronic Letters on Computer Vision and Image Analysis |
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ELCVIA |
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13 |
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2 |
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9-10 |
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Colonoscopy; polyp localization; polyp segmentation; Eye-tracking |
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Colorectal cancer is the fourth most common cause of cancer death worldwide and its survival rate depends on the stage in which it is detected on hence the necessity for an early colon screening. There are several screening techniques but colonoscopy is still nowadays the gold standard, although it has some drawbacks such as the miss rate. Our contribution, in the field of intelligent systems for colonoscopy, aims at providing a polyp localization and a polyp segmentation system based on a model of appearance for polyps. To develop both methods we define a model of appearance for polyps, which describes a polyp as enclosed by intensity valleys. The novelty of our contribution resides on the fact that we include in our model aspects of the image formation and we also consider the presence of other elements from the endoluminal scene such as specular highlights and blood vessels, which have an impact on the performance of our methods. In order to develop our polyp localization method we accumulate valley information in order to generate energy maps, which are also used to guide the polyp segmentation. Our methods achieve promising results in polyp localization and segmentation. As we want to explore the usability of our methods we present a comparative analysis between physicians fixations obtained via an eye tracking device and our polyp localization method. The results show that our method is indistinguishable to novice physicians although it is far from expert physicians. |
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Alicia Fornes; Volkmar Frinken |
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MV |
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Admin @ si @ Ber2014 |
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2487 |
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Author |
Ariel Amato |
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Title |
Moving cast shadow detection |
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Journal Article |
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2014 |
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Electronic letters on computer vision and image analysis |
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ELCVIA |
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13 |
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2 |
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70-71 |
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Motion perception is an amazing innate ability of the creatures on the planet. This adroitness entails a functional advantage that enables species to compete better in the wild. The motion perception ability is usually employed at different levels, allowing from the simplest interaction with the ’physis’ up to the most transcendental survival tasks. Among the five classical perception system , vision is the most widely used in the motion perception field. Millions years of evolution have led to a highly specialized visual system in humans, which is characterized by a tremendous accuracy as well as an extraordinary robustness. Although humans and an immense diversity of species can distinguish moving object with a seeming simplicity, it has proven to be a difficult and non trivial problem from a computational perspective. In the field of Computer Vision, the detection of moving objects is a challenging and fundamental research area. This can be referred to as the ’origin’ of vast and numerous vision-based research sub-areas. Nevertheless, from the bottom to the top of this hierarchical analysis, the foundations still relies on when and where motion has occurred in an image. Pixels corresponding to moving objects in image sequences can be identified by measuring changes in their values. However, a pixel’s value (representing a combination of color and brightness) could also vary due to other factors such as: variation in scene illumination, camera noise and nonlinear sensor responses among others. The challenge lies in detecting if the changes in pixels’ value are caused by a genuine object movement or not. An additional challenging aspect in motion detection is represented by moving cast shadows. The paradox arises because a moving object and its cast shadow share similar motion patterns. However, a moving cast shadow is not a moving object. In fact, a shadow represents a photometric illumination effect caused by the relative position of the object with respect to the light sources. Shadow detection methods are mainly divided in two domains depending on the application field. One normally consists of static images where shadows are casted by static objects, whereas the second one is referred to image sequences where shadows are casted by moving objects. For the first case, shadows can provide additional geometric and semantic cues about shape and position of its casting object as well as the localization of the light source. Although the previous information can be extracted from static images as well as video sequences, the main focus in the second area is usually change detection, scene matching or surveillance. In this context, a shadow can severely affect with the analysis and interpretation of the scene. The work done in the thesis is focused on the second case, thus it addresses the problem of detection and removal of moving cast shadows in video sequences in order to enhance the detection of moving object. |
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Admin @ si @ Ama2014 |
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2870 |
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Dorota Kaminska; Kadir Aktas; Davit Rizhinashvili; Danila Kuklyanov; Abdallah Hussein Sham; Sergio Escalera; Kamal Nasrollahi; Thomas B. Moeslund; Gholamreza Anbarjafari |
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Title |
Two-stage Recognition and Beyond for Compound Facial Emotion Recognition |
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Journal Article |
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2021 |
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Electronics |
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ELEC |
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10 |
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22 |
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2847 |
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compound emotion recognition; facial expression recognition; dominant and complementary emotion recognition; deep learning |
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Facial emotion recognition is an inherently complex problem due to individual diversity in facial features and racial and cultural differences. Moreover, facial expressions typically reflect the mixture of people’s emotional statuses, which can be expressed using compound emotions. Compound facial emotion recognition makes the problem even more difficult because the discrimination between dominant and complementary emotions is usually weak. We have created a database that includes 31,250 facial images with different emotions of 115 subjects whose gender distribution is almost uniform to address compound emotion recognition. In addition, we have organized a competition based on the proposed dataset, held at FG workshop 2020. This paper analyzes the winner’s approach—a two-stage recognition method (1st stage, coarse recognition; 2nd stage, fine recognition), which enhances the classification of symmetrical emotion labels. |
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HUPBA; no proj |
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no |
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Admin @ si @ KAR2021 |
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3642 |
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Wenwen Fu; Zhihong An; Wendong Huang; Haoran Sun; Wenjuan Gong; Jordi Gonzalez |
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Title |
A Spatio-Temporal Spotting Network with Sliding Windows for Micro-Expression Detection |
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2023 |
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Electronics |
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ELEC |
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12 |
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18 |
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3947 |
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micro-expression spotting; sliding window; key frame extraction |
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Micro-expressions reveal underlying emotions and are widely applied in political psychology, lie detection, law enforcement and medical care. Micro-expression spotting aims to detect the temporal locations of facial expressions from video sequences and is a crucial task in micro-expression recognition. In this study, the problem of micro-expression spotting is formulated as micro-expression classification per frame. We propose an effective spotting model with sliding windows called the spatio-temporal spotting network. The method involves a sliding window detection mechanism, combines the spatial features from the local key frames and the global temporal features and performs micro-expression spotting. The experiments are conducted on the CAS(ME)2 database and the SAMM Long Videos database, and the results demonstrate that the proposed method outperforms the state-of-the-art method by 30.58% for the CAS(ME)2 and 23.98% for the SAMM Long Videos according to overall F-scores. |
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Admin @ si @ FAH2023 |
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3864 |
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Gloria Fernandez Esparrach; Jorge Bernal; Maria Lopez Ceron; Henry Cordova; Cristina Sanchez Montes; Cristina Rodriguez de Miguel; F. Javier Sanchez |
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Exploring the clinical potential of an automatic colonic polyp detection method based on the creation of energy maps |
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Journal Article |
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2016 |
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Endoscopy |
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END |
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48 |
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9 |
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837-842 |
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Background and aims: Polyp miss-rate is a drawback of colonoscopy that increases significantly in small polyps. We explored the efficacy of an automatic computer vision method for polyp detection.
Methods: Our method relies on a model that defines polyp boundaries as valleys of image intensity. Valley information is integrated into energy maps which represent the likelihood of polyp presence.
Results: In 24 videos containing polyps from routine colonoscopies, all polyps were detected in at least one frame. Mean values of the maximum of energy map were higher in frames with polyps than without (p<0.001). Performance improved in high quality frames (AUC= 0.79, 95%CI: 0.70-0.87 vs 0.75, 95%CI: 0.66-0.83). Using 3.75 as maximum threshold value, sensitivity and specificity for detection of polyps were 70.4% (95%CI: 60.3-80.8) and 72.4% (95%CI: 61.6-84.6), respectively.
Conclusion: Energy maps showed a good performance for colonic polyp detection. This indicates a potential applicability in clinical practice. |
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MV; |
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Admin @ si @FBL2016 |
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2778 |
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Cristina Sanchez Montes; F. Javier Sanchez; Jorge Bernal; Henry Cordova; Maria Lopez Ceron; Miriam Cuatrecasas; Cristina Rodriguez de Miguel; Ana Garcia Rodriguez; Rodrigo Garces Duran; Maria Pellise; Josep Llach; Gloria Fernandez Esparrach |
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Title |
Computer-aided Prediction of Polyp Histology on White-Light Colonoscopy using Surface Pattern Analysis |
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2019 |
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Endoscopy |
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END |
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51 |
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3 |
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261-265 |
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Background and study aims: To evaluate a new computational histology prediction system based on colorectal polyp textural surface patterns using high definition white light images.
Patients and methods: Textural elements (textons) were characterized according to their contrast with respect to the surface, shape and number of bifurcations, assuming that dysplastic polyps are associated with highly contrasted, large tubular patterns with some degree of bifurcation. Computer-aided diagnosis (CAD) was compared with pathological diagnosis and the diagnosis by the endoscopists using Kudo and NICE classification.
Results: Images of 225 polyps were evaluated (142 dysplastic and 83 non-dysplastic). CAD system correctly classified 205 (91.1%) polyps, 131/142 (92.3%) dysplastic and 74/83 (89.2%) non-dysplastic. For the subgroup of 100 diminutive (<5 mm) polyps, CAD correctly classified 87 (87%) polyps, 43/50 (86%) dysplastic and 44/50 (88%) non-dysplastic. There were not statistically significant differences in polyp histology prediction based on CAD system and on endoscopist assessment.
Conclusion: A computer vision system based on the characterization of the polyp surface in the white light accurately predicts colorectal polyp histology. |
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MV; 600.096; 600.119; 600.075 |
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Admin @ si @ SSB2019 |
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3164 |
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Ana Garcia Rodriguez; Yael Tudela; Henry Cordova; S. Carballal; I. Ordas; L. Moreira; E. Vaquero; O. Ortiz; L. Rivero; F. Javier Sanchez; Miriam Cuatrecasas; Maria Pellise; Jorge Bernal; Gloria Fernandez Esparrach |
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First in Vivo Computer-Aided Diagnosis of Colorectal Polyps using White Light Endoscopy |
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2022 |
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Endoscopy |
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END |
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54 |
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2022/04/14 |
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Georg Thieme Verlag KG |
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Admin @ si @ GTC2022a |
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3746 |
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O.F.Ahmad; Y.Mori; M.Misawa; S.Kudo; J.T.Anderson; Jorge Bernal |
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Establishing key research questions for the implementation of artificial intelligence in colonoscopy: a modified Delphi method |
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2021 |
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Endoscopy |
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53 |
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9 |
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893-901 |
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BACKGROUND : Artificial intelligence (AI) research in colonoscopy is progressing rapidly but widespread clinical implementation is not yet a reality. We aimed to identify the top implementation research priorities. METHODS : An established modified Delphi approach for research priority setting was used. Fifteen international experts, including endoscopists and translational computer scientists/engineers, from nine countries participated in an online survey over 9 months. Questions related to AI implementation in colonoscopy were generated as a long-list in the first round, and then scored in two subsequent rounds to identify the top 10 research questions. RESULTS : The top 10 ranked questions were categorized into five themes. Theme 1: clinical trial design/end points (4 questions), related to optimum trial designs for polyp detection and characterization, determining the optimal end points for evaluation of AI, and demonstrating impact on interval cancer rates. Theme 2: technological developments (3 questions), including improving detection of more challenging and advanced lesions, reduction of false-positive rates, and minimizing latency. Theme 3: clinical adoption/integration (1 question), concerning the effective combination of detection and characterization into one workflow. Theme 4: data access/annotation (1 question), concerning more efficient or automated data annotation methods to reduce the burden on human experts. Theme 5: regulatory approval (1 question), related to making regulatory approval processes more efficient. CONCLUSIONS : This is the first reported international research priority setting exercise for AI in colonoscopy. The study findings should be used as a framework to guide future research with key stakeholders to accelerate the clinical implementation of AI in endoscopy. |
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3670 |
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Ana Garcia Rodriguez; Yael Tudela; Henry Cordova; S. Carballal; I. Ordas; L. Moreira; E. Vaquero; O. Ortiz; L. Rivero; F. Javier Sanchez; Miriam Cuatrecasas; Maria Pellise; Jorge Bernal; Gloria Fernandez Esparrach |
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In vivo computer-aided diagnosis of colorectal polyps using white light endoscopy |
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2022 |
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Endoscopy International Open |
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ENDIO |
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10 |
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9 |
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E1201-E1207 |
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Background and study aims Artificial intelligence is currently able to accurately predict the histology of colorectal polyps. However, systems developed to date use complex optical technologies and have not been tested in vivo. The objective of this study was to evaluate the efficacy of a new deep learning-based optical diagnosis system, ATENEA, in a real clinical setting using only high-definition white light endoscopy (WLE) and to compare its performance with endoscopists. Methods ATENEA was prospectively tested in real life on consecutive polyps detected in colorectal cancer screening colonoscopies at Hospital Clínic. No images were discarded, and only WLE was used. The in vivo ATENEA's prediction (adenoma vs non-adenoma) was compared with the prediction of four staff endoscopists without specific training in optical diagnosis for the study purposes. Endoscopists were blind to the ATENEA output. Histology was the gold standard. Results Ninety polyps (median size: 5 mm, range: 2-25) from 31 patients were included of which 69 (76.7 %) were adenomas. ATENEA correctly predicted the histology in 63 of 69 (91.3 %, 95 % CI: 82 %-97 %) adenomas and 12 of 21 (57.1 %, 95 % CI: 34 %-78 %) non-adenomas while endoscopists made correct predictions in 52 of 69 (75.4 %, 95 % CI: 60 %-85 %) and 20 of 21 (95.2 %, 95 % CI: 76 %-100 %), respectively. The global accuracy was 83.3 % (95 % CI: 74%-90 %) and 80 % (95 % CI: 70 %-88 %) for ATENEA and endoscopists, respectively. Conclusion ATENEA can accurately be used for in vivo characterization of colorectal polyps, enabling the endoscopist to make direct decisions. ATENEA showed a global accuracy similar to that of endoscopists despite an unsatisfactory performance for non-adenomatous lesions. |
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2022 Sep 14 |
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ISE; 600.157 |
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Razieh Rastgoo; Kourosh Kiani; Sergio Escalera |
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Multi-Modal Deep Hand Sign Language Recognition in Still Images Using Restricted Boltzmann Machine |
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2018 |
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Entropy |
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20 |
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809 |
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hand sign language; deep learning; restricted Boltzmann machine (RBM); multi-modal; profoundly deaf; noisy image |
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In this paper, a deep learning approach, Restricted Boltzmann Machine (RBM), is used to perform automatic hand sign language recognition from visual data. We evaluate how RBM, as a deep generative model, is capable of generating the distribution of the input data for an enhanced recognition of unseen data. Two modalities, RGB and Depth, are considered in the model input in three forms: original image, cropped image, and noisy cropped image. Five crops of the input image are used and the hand of these cropped images are detected using Convolutional Neural Network (CNN). After that, three types of the detected hand images are generated for each modality and input to RBMs. The outputs of the RBMs for two modalities are fused in another RBM in order to recognize the output sign label of the input image. The proposed multi-modal model is trained on all and part of the American alphabet and digits of four publicly available datasets. We also evaluate the robustness of the proposal against noise. Experimental results show that the proposed multi-modal model, using crops and the RBM fusing methodology, achieves state-of-the-art results on Massey University Gesture Dataset 2012, American Sign Language (ASL). and Fingerspelling Dataset from the University of Surrey’s Center for Vision, Speech and Signal Processing, NYU, and ASL Fingerspelling A datasets. |
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Mohammad N. S. Jahromi; Pau Buch Cardona; Egils Avots; Kamal Nasrollahi; Sergio Escalera; Thomas B. Moeslund; Gholamreza Anbarjafari |
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Privacy-Constrained Biometric System for Non-cooperative Users |
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2019 |
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biometric recognition; multimodal-based human identification; privacy; deep learning |
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With the consolidation of the new data protection regulation paradigm for each individual within the European Union (EU), major biometric technologies are now confronted with many concerns related to user privacy in biometric deployments. When individual biometrics are disclosed, the sensitive information about his/her personal data such as financial or health are at high risk of being misused or compromised. This issue can be escalated considerably over scenarios of non-cooperative users, such as elderly people residing in care homes, with their inability to interact conveniently and securely with the biometric system. The primary goal of this study is to design a novel database to investigate the problem of automatic people recognition under privacy constraints. To do so, the collected data-set contains the subject’s hand and foot traits and excludes the face biometrics of individuals in order to protect their privacy. We carried out extensive simulations using different baseline methods, including deep learning. Simulation results show that, with the spatial features extracted from the subject sequence in both individual hand or foot videos, state-of-the-art deep models provide promising recognition performance. |
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Ikechukwu Ofodile; Ahmed Helmi; Albert Clapes; Egils Avots; Kerttu Maria Peensoo; Sandhra Mirella Valdma; Andreas Valdmann; Heli Valtna Lukner; Sergey Omelkov; Sergio Escalera; Cagri Ozcinar; Gholamreza Anbarjafari |
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Action recognition using single-pixel time-of-flight detection |
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2019 |
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21 |
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414 |
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single pixel single photon image acquisition; time-of-flight; action recognition |
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Action recognition is a challenging task that plays an important role in many robotic systems, which highly depend on visual input feeds. However, due to privacy concerns, it is important to find a method which can recognise actions without using visual feed. In this paper, we propose a concept for detecting actions while preserving the test subject’s privacy. Our proposed method relies only on recording the temporal evolution of light pulses scattered back from the scene.
Such data trace to record one action contains a sequence of one-dimensional arrays of voltage values acquired by a single-pixel detector at 1 GHz repetition rate. Information about both the distance to the object and its shape are embedded in the traces. We apply machine learning in the form of recurrent neural networks for data analysis and demonstrate successful action recognition. The experimental results show that our proposed method could achieve on average 96.47% accuracy on the actions walking forward, walking backwards, sitting down, standing up and waving hand, using recurrent
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HuPBA; no proj |
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Admin @ si @ OHC2019 |
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3319 |
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