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Author P. Canals; Simone Balocco; O. Diaz; J. Li; A. Garcia Tornel; M. Olive Gadea; M. Ribo
Title A fully automatic method for vascular tortuosity feature extraction in the supra-aortic region: unraveling possibilities in stroke treatment planning Type Journal Article
Year 2023 Publication Computerized Medical Imaging and Graphics Abbreviated Journal (up) CMIG
Volume 104 Issue 102170 Pages
Keywords Artificial intelligence; Deep learning; Stroke; Thrombectomy; Vascular feature extraction; Vascular tortuosity
Abstract Vascular tortuosity of supra-aortic vessels is widely considered one of the main reasons for failure and delays in endovascular treatment of large vessel occlusion in patients with acute ischemic stroke. Characterization of tortuosity is a challenging task due to the lack of objective, robust and effective analysis tools. We present a fully automatic method for arterial segmentation, vessel labelling and tortuosity feature extraction applied to the supra-aortic region. A sample of 566 computed tomography angiography scans from acute ischemic stroke patients (aged 74.8 ± 12.9, 51.0% females) were used for training, validation and testing of a segmentation module based on a U-Net architecture (162 cases) and a vessel labelling module powered by a graph U-Net (566 cases). Successively, 30 cases were processed for testing of a tortuosity feature extraction module. Measurements obtained through automatic processing were compared to manual annotations from two observers for a thorough validation of the method. The proposed feature extraction method presented similar performance to the inter-rater variability observed in the measurement of 33 geometrical and morphological features of the arterial anatomy in the supra-aortic region. This system will contribute to the development of more complex models to advance the treatment of stroke by adding immediate automation, objectivity, repeatability and robustness to the vascular tortuosity characterization of patients.
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Notes MILAB Approved no
Call Number Admin @ si @ CBD2023 Serial 4005
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Author Tadashi Araki; Nobutaka Ikeda; Nilanjan Dey; Sayan Chakraborty; Luca Saba; Dinesh Kumar; Elisa Cuadrado Godia; Xiaoyi Jiang; Ajay Gupta; Petia Radeva; John R. Laird; Andrew Nicolaides; Jasjit S. Suri
Title A comparative approach of four different image registration techniques for quantitative assessment of coronary artery calcium lesions using intravascular ultrasound Type Journal Article
Year 2015 Publication Computer Methods and Programs in Biomedicine Abbreviated Journal (up) CMPB
Volume 118 Issue 2 Pages 158-172
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Abstract
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Notes MILAB Approved no
Call Number Admin @ si @ AID2015 Serial 2640
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Author Sumit K. Banchhor; Tadashi Araki; Narendra D. Londhe; Nobutaka Ikeda; Petia Radeva; Ayman El-Baz; Luca Saba; Andrew Nicolaides; Shoaib Shafique; John R. Laird; Jasjit S. Suri
Title Five multiresolution-based calcium volume measurement techniques from coronary IVUS videos: A comparative approach Type Journal Article
Year 2016 Publication Computer Methods and Programs in Biomedicine Abbreviated Journal (up) CMPB
Volume 134 Issue Pages 237-258
Keywords
Abstract BACKGROUND AND OBJECTIVE:
Fast intravascular ultrasound (IVUS) video processing is required for calcium volume computation during the planning phase of percutaneous coronary interventional (PCI) procedures. Nonlinear multiresolution techniques are generally applied to improve the processing time by down-sampling the video frames.
METHODS:
This paper presents four different segmentation methods for calcium volume measurement, namely Threshold-based, Fuzzy c-Means (FCM), K-means, and Hidden Markov Random Field (HMRF) embedded with five different kinds of multiresolution techniques (bilinear, bicubic, wavelet, Lanczos, and Gaussian pyramid). This leads to 20 different kinds of combinations. IVUS image data sets consisting of 38,760 IVUS frames taken from 19 patients were collected using 40 MHz IVUS catheter (Atlantis® SR Pro, Boston Scientific®, pullback speed of 0.5 mm/sec.). The performance of these 20 systems is compared with and without multiresolution using the following metrics: (a) computational time; (b) calcium volume; (c) image quality degradation ratio; and (d) quality assessment ratio.
RESULTS:
Among the four segmentation methods embedded with five kinds of multiresolution techniques, FCM segmentation combined with wavelet-based multiresolution gave the best performance. FCM and wavelet experienced the highest percentage mean improvement in computational time of 77.15% and 74.07%, respectively. Wavelet interpolation experiences the highest mean precision-of-merit (PoM) of 94.06 ± 3.64% and 81.34 ± 16.29% as compared to other multiresolution techniques for volume level and frame level respectively. Wavelet multiresolution technique also experiences the highest Jaccard Index and Dice Similarity of 0.7 and 0.8, respectively. Multiresolution is a nonlinear operation which introduces bias and thus degrades the image. The proposed system also provides a bias correction approach to enrich the system, giving a better mean calcium volume similarity for all the multiresolution-based segmentation methods. After including the bias correction, bicubic interpolation gives the largest increase in mean calcium volume similarity of 4.13% compared to the rest of the multiresolution techniques. The system is automated and can be adapted in clinical settings.
CONCLUSIONS:
We demonstrated the time improvement in calcium volume computation without compromising the quality of IVUS image. Among the 20 different combinations of multiresolution with calcium volume segmentation methods, the FCM embedded with wavelet-based multiresolution gave the best performance.
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Notes MILAB; Approved no
Call Number Admin @ si @ BAL2016 Serial 2830
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Author Giuseppe Pezzano; Vicent Ribas Ripoll; Petia Radeva
Title CoLe-CNN: Context-learning convolutional neural network with adaptive loss function for lung nodule segmentation Type Journal Article
Year 2021 Publication Computer Methods and Programs in Biomedicine Abbreviated Journal (up) CMPB
Volume 198 Issue Pages 105792
Keywords
Abstract Background and objective:An accurate segmentation of lung nodules in computed tomography images is a crucial step for the physical characterization of the tumour. Being often completely manually accomplished, nodule segmentation turns to be a tedious and time-consuming procedure and this represents a high obstacle in clinical practice. In this paper, we propose a novel Convolutional Neural Network for nodule segmentation that combines a light and efficient architecture with innovative loss function and segmentation strategy. Methods:In contrast to most of the standard end-to-end architectures for nodule segmentation, our network learns the context of the nodules by producing two masks representing all the background and secondary-important elements in the Computed Tomography scan. The nodule is detected by subtracting the context from the original scan image. Additionally, we introduce an asymmetric loss function that automatically compensates for potential errors in the nodule annotations. We trained and tested our Neural Network on the public LIDC-IDRI database, compared it with the state of the art and run a pseudo-Turing test between four radiologists and the network. Results:The results proved that the behaviour of the algorithm is very near to the human performance and its segmentation masks are almost indistinguishable from the ones made by the radiologists. Our method clearly outperforms the state of the art on CT nodule segmentation in terms of F1 score and IoU of and respectively. Conclusions: The main structure of the network ensures all the properties of the UNet architecture, while the Multi Convolutional Layers give a more accurate pattern recognition. The newly adopted solutions also increase the details on the border of the nodule, even under the noisiest conditions. This method can be applied now for single CT slice nodule segmentation and it represents a starting point for the future development of a fully automatic 3D segmentation software.
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Notes MILAB; no proj Approved no
Call Number Admin @ si @ PRR2021 Serial 3530
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Author Juan Borrego-Carazo; Carles Sanchez; David Castells; Jordi Carrabina; Debora Gil
Title BronchoPose: an analysis of data and model configuration for vision-based bronchoscopy pose estimation Type Journal Article
Year 2023 Publication Computer Methods and Programs in Biomedicine Abbreviated Journal (up) CMPB
Volume 228 Issue Pages 107241
Keywords Videobronchoscopy guiding; Deep learning; Architecture optimization; Datasets; Standardized evaluation framework; Pose estimation
Abstract Vision-based bronchoscopy (VB) models require the registration of the virtual lung model with the frames from the video bronchoscopy to provide effective guidance during the biopsy. The registration can be achieved by either tracking the position and orientation of the bronchoscopy camera or by calibrating its deviation from the pose (position and orientation) simulated in the virtual lung model. Recent advances in neural networks and temporal image processing have provided new opportunities for guided bronchoscopy. However, such progress has been hindered by the lack of comparative experimental conditions.
In the present paper, we share a novel synthetic dataset allowing for a fair comparison of methods. Moreover, this paper investigates several neural network architectures for the learning of temporal information at different levels of subject personalization. In order to improve orientation measurement, we also present a standardized comparison framework and a novel metric for camera orientation learning. Results on the dataset show that the proposed metric and architectures, as well as the standardized conditions, provide notable improvements to current state-of-the-art camera pose estimation in video bronchoscopy.
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Publisher Elsevier Place of Publication Editor
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Notes IAM; Approved no
Call Number Admin @ si @ BSC2023 Serial 3702
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Author Debora Gil; David Roche; Agnes Borras; Jesus Giraldo
Title Terminating Evolutionary Algorithms at their Steady State Type Journal Article
Year 2015 Publication Computational Optimization and Applications Abbreviated Journal (up) COA
Volume 61 Issue 2 Pages 489-515
Keywords Evolutionary algorithms; Termination condition; Steady state; Differential evolution
Abstract Assessing the reliability of termination conditions for evolutionary algorithms (EAs) is of prime importance. An erroneous or weak stop criterion can negatively affect both the computational effort and the final result. We introduce a statistical framework for assessing whether a termination condition is able to stop an EA at its steady state, so that its results can not be improved anymore. We use a regression model in order to determine the requirements ensuring that a measure derived from EA evolving population is related to the distance to the optimum in decision variable space. Our framework is analyzed across 24 benchmark test functions and two standard termination criteria based on function fitness value in objective function space and EA population decision variable space distribution for the differential evolution (DE) paradigm. Results validate our framework as a powerful tool for determining the capability of a measure for terminating EA and the results also identify the decision variable space distribution as the best-suited for accurately terminating DE in real-world applications.
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Publisher Springer US Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 0926-6003 ISBN Medium
Area Expedition Conference
Notes IAM; 600.044; 605.203; 600.060; 600.075 Approved no
Call Number Admin @ si @ GRB2015 Serial 2560
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Author Antonio Clavelli; Dimosthenis Karatzas; Josep Llados; Mario Ferraro; Giuseppe Boccignone
Title Modelling task-dependent eye guidance to objects in pictures Type Journal Article
Year 2014 Publication Cognitive Computation Abbreviated Journal (up) CoCom
Volume 6 Issue 3 Pages 558-584
Keywords Visual attention; Gaze guidance; Value; Payoff; Stochastic fixation prediction
Abstract 5Y Impact Factor: 1.14 / 3rd (Computer Science, Artificial Intelligence)
We introduce a model of attentional eye guidance based on the rationale that the deployment of gaze is to be considered in the context of a general action-perception loop relying on two strictly intertwined processes: sensory processing, depending on current gaze position, identifies sources of information that are most valuable under the given task; motor processing links such information with the oculomotor act by sampling the next gaze position and thus performing the gaze shift. In such a framework, the choice of where to look next is task-dependent and oriented to classes of objects embedded within pictures of complex scenes. The dependence on task is taken into account by exploiting the value and the payoff of gazing at certain image patches or proto-objects that provide a sparse representation of the scene objects. The different levels of the action-perception loop are represented in probabilistic form and eventually give rise to a stochastic process that generates the gaze sequence. This way the model also accounts for statistical properties of gaze shifts such as individual scan path variability. Results of the simulations are compared either with experimental data derived from publicly available datasets and from our own experiments.
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Publisher Springer US Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 1866-9956 ISBN Medium
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Notes DAG; 600.056; 600.045; 605.203; 601.212; 600.077 Approved no
Call Number Admin @ si @ CKL2014 Serial 2419
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Author Chenyang Fu; Kaida Xiao; Dimosthenis Karatzas; Sophie Wuerger
Title Investigation of Unique Hue Setting Changes with Ageing Type Journal Article
Year 2011 Publication Chinese Optics Letters Abbreviated Journal (up) COL
Volume 9 Issue 5 Pages 053301-1-5
Keywords
Abstract Clromatic sensitivity along the protan, deutan, and tritan lines and the loci of the unique hues (red, green, yellow, blue) for a very large sample (n = 185) of colour-normal observers ranging from 18 to 75 years of age are assessed. Visual judgments are obtained under normal viewing conditions using colour patches on self-luminous display under controlled adaptation conditions. Trivector discrimination thresholds show an increase as a function of age along the protan, deutan, and tritan axes, with the largest increase present along the tritan line, less pronounced shifts in unique hue settings are also observed. Based on the chromatic (protan, deutan, tritan) thresholds and using scaled cone signals, we predict the unique hue changes with ageing. A dependency on age for unique red and unique yellow for predicted hue angle is found. We conclude that the chromatic sensitivity deteriorates significantly with age, whereas the appearance of unique hues is much less affected, remaining almost constant despite the known changes in the ocular media.
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Notes DAG Approved no
Call Number Admin @ si @ XFW2011 Serial 1818
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Author Juan Ramon Terven Salinas; Joaquin Salas; Bogdan Raducanu
Title New Opportunities for Computer Vision-Based Assistive Technology Systems for the Visually Impaired Type Journal Article
Year 2014 Publication Computer Abbreviated Journal (up) COMP
Volume 47 Issue 4 Pages 52-58
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Abstract Computing advances and increased smartphone use gives technology system designers greater flexibility in exploiting computer vision to support visually impaired users. Understanding these users' needs will certainly provide insight for the development of improved usability of computing devices.
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Series Editor Series Title Abbreviated Series Title
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ISSN 0018-9162 ISBN Medium
Area Expedition Conference
Notes LAMP; Approved no
Call Number Admin @ si @ TSR2014a Serial 2317
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Author Miguel Reyes; Albert Clapes; Jose Ramirez; Juan R Revilla; Sergio Escalera
Title Automatic Digital Biometry Analysis based on Depth Maps Type Journal Article
Year 2013 Publication Computers in Industry Abbreviated Journal (up) COMPUTIND
Volume 64 Issue 9 Pages 1316-1325
Keywords Multi-modal data fusion; Depth maps; Posture analysis; Anthropometric data; Musculo-skeletal disorders; Gesture analysis
Abstract World Health Organization estimates that 80% of the world population is affected by back-related disorders during his life. Current practices to analyze musculo-skeletal disorders (MSDs) are expensive, subjective, and invasive. In this work, we propose a tool for static body posture analysis and dynamic range of movement estimation of the skeleton joints based on 3D anthropometric information from multi-modal data. Given a set of keypoints, RGB and depth data are aligned, depth surface is reconstructed, keypoints are matched, and accurate measurements about posture and spinal curvature are computed. Given a set of joints, range of movement measurements is also obtained. Moreover, gesture recognition based on joint movements is performed to look for the correctness in the development of physical exercises. The system shows high precision and reliable measurements, being useful for posture reeducation purposes to prevent MSDs, as well as tracking the posture evolution of patients in rehabilitation treatments.
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Publisher Elsevier Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
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Notes HuPBA;MILAB Approved no
Call Number Admin @ si @ RCR2013 Serial 2252
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Author Joan Serrat; Felipe Lumbreras; Antonio Lopez
Title Cost estimation of custom hoses from STL files and CAD drawings Type Journal Article
Year 2013 Publication Computers in Industry Abbreviated Journal (up) COMPUTIND
Volume 64 Issue 3 Pages 299-309
Keywords On-line quotation; STL format; Regression; Gaussian process
Abstract We present a method for the cost estimation of custom hoses from CAD models. They can come in two formats, which are easy to generate: a STL file or the image of a CAD drawing showing several orthogonal projections. The challenges in either cases are, first, to obtain from them a high level 3D description of the shape, and second, to learn a regression function for the prediction of the manufacturing time, based on geometric features of the reconstructed shape. The chosen description is the 3D line along the medial axis of the tube and the diameter of the circular sections along it. In order to extract it from STL files, we have adapted RANSAC, a robust parametric fitting algorithm. As for CAD drawing images, we propose a new technique for 3D reconstruction from data entered on any number of orthogonal projections. The regression function is a Gaussian process, which does not constrain the function to adopt any specific form and is governed by just two parameters. We assess the accuracy of the manufacturing time estimation by k-fold cross validation on 171 STL file models for which the time is provided by an expert. The results show the feasibility of the method, whereby the relative error for 80% of the testing samples is below 15%.
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Publisher Elsevier Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
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Notes ADAS; 600.057; 600.054; 605.203 Approved no
Call Number Admin @ si @ SLL2013; ADAS @ adas @ Serial 2161
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Author Juan Jose Rubio; Takahiro Kashiwa; Teera Laiteerapong; Wenlong Deng; Kohei Nagai; Sergio Escalera; Kotaro Nakayama; Yutaka Matsuo; Helmut Prendinger
Title Multi-class structural damage segmentation using fully convolutional networks Type Journal Article
Year 2019 Publication Computers in Industry Abbreviated Journal (up) COMPUTIND
Volume 112 Issue Pages 103121
Keywords Bridge damage detection; Deep learning; Semantic segmentation
Abstract Structural Health Monitoring (SHM) has benefited from computer vision and more recently, Deep Learning approaches, to accurately estimate the state of deterioration of infrastructure. In our work, we test Fully Convolutional Networks (FCNs) with a dataset of deck areas of bridges for damage segmentation. We create a dataset for delamination and rebar exposure that has been collected from inspection records of bridges in Niigata Prefecture, Japan. The dataset consists of 734 images with three labels per image, which makes it the largest dataset of images of bridge deck damage. This data allows us to estimate the performance of our method based on regions of agreement, which emulates the uncertainty of in-field inspections. We demonstrate the practicality of FCNs to perform automated semantic segmentation of surface damages. Our model achieves a mean accuracy of 89.7% for delamination and 78.4% for rebar exposure, and a weighted F1 score of 81.9%.
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Notes HuPBA; no proj Approved no
Call Number Admin @ si @ RKL2019 Serial 3315
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Author Kaida Xiao; Sophie Wuerger; Chenyang Fu; Dimosthenis Karatzas
Title Unique Hue Data for Colour Appearance Models. Part i: Loci of Unique Hues and Hue Uniformity Type Journal Article
Year 2011 Publication Color Research & Application Abbreviated Journal (up) CRA
Volume 36 Issue 5 Pages 316-323
Keywords unique hues; colour appearance models; CIECAM02; hue uniformity
Abstract Psychophysical experiments were conducted to assess unique hues on a CRT display for a large sample of colour-normal observers (n 1⁄4 185). These data were then used to evaluate the most commonly used colour appear- ance model, CIECAM02, by transforming the CIEXYZ tris- timulus values of the unique hues to the CIECAM02 colour appearance attributes, lightness, chroma and hue angle. We report two findings: (1) the hue angles derived from our unique hue data are inconsistent with the commonly used Natural Color System hues that are incorporated in the CIECAM02 model. We argue that our predicted unique hue angles (derived from our large dataset) provide a more reliable standard for colour management applications when the precise specification of these salient colours is im- portant. (2) We test hue uniformity for CIECAM02 in all four unique hues and show significant disagreements for all hues, except for unique red which seems to be invariant under lightness changes. Our dataset is useful to improve the CIECAM02 model as it provides reliable data for benchmarking.
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Publisher Wiley Periodicals Inc Place of Publication Editor
Language Summary Language Original Title
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Notes DAG Approved no
Call Number Admin @ si @ XWF2011 Serial 1816
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Author Kaida Xiao; Chenyang Fu; D.Mylonas; Dimosthenis Karatzas; S. Wuerger
Title Unique Hue Data for Colour Appearance Models. Part ii: Chromatic Adaptation Transform Type Journal Article
Year 2013 Publication Color Research & Application Abbreviated Journal (up) CRA
Volume 38 Issue 1 Pages 22-29
Keywords
Abstract Unique hue settings of 185 observers under three room-lighting conditions were used to evaluate the accuracy of full and mixed chromatic adaptation transform models of CIECAM02 in terms of unique hue reproduction. Perceptual hue shifts in CIECAM02 were evaluated for both models with no clear difference using the current Commission Internationale de l'Éclairage (CIE) recommendation for mixed chromatic adaptation ratio. Using our large dataset of unique hue data as a benchmark, an optimised parameter is proposed for chromatic adaptation under mixed illumination conditions that produces more accurate results in unique hue reproduction. © 2011 Wiley Periodicals, Inc. Col Res Appl, 2013
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Notes DAG Approved no
Call Number Admin @ si @ XFM2013 Serial 1822
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Author Marcel P. Lucassen; Theo Gevers; Arjan Gijsenij
Title Texture Affects Color Emotion Type Journal Article
Year 2011 Publication Color Research & Applications Abbreviated Journal (up) CRA
Volume 36 Issue 6 Pages 426–436
Keywords color;texture;color emotion;observer variability;ranking
Abstract Several studies have recorded color emotions in subjects viewing uniform color (UC) samples. We conduct an experiment to measure and model how these color emotions change when texture is added to the color samples. Using a computer monitor, our subjects arrange samples along four scales: warm–cool, masculine–feminine, hard–soft, and heavy–light. Three sample types of increasing visual complexity are used: UC, grayscale textures, and color textures (CTs). To assess the intraobserver variability, the experiment is repeated after 1 week. Our results show that texture fully determines the responses on the Hard-Soft scale, and plays a role of decreasing weight for the masculine–feminine, heavy–light, and warm–cool scales. Using some 25,000 observer responses, we derive color emotion functions that predict the group-averaged scale responses from the samples' color and texture parameters. For UC samples, the accuracy of our functions is significantly higher (average R2 = 0.88) than that of previously reported functions applied to our data. The functions derived for CT samples have an accuracy of R2 = 0.80. We conclude that when textured samples are used in color emotion studies, the psychological responses may be strongly affected by texture. © 2010 Wiley Periodicals, Inc. Col Res Appl, 2010
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Notes ALTRES;ISE Approved no
Call Number Admin @ si @ LGG2011 Serial 1844
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