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Reuben Dorent; Aaron Kujawa; Marina Ivory; Spyridon Bakas; Nikola Rieke; Samuel Joutard; Ben Glocker; Jorge Cardoso; Marc Modat; Kayhan Batmanghelich; Arseniy Belkov; Maria Baldeon Calisto; Jae Won Choi; Benoit M. Dawant; Hexin Dong; Sergio Escalera; Yubo Fan; Lasse Hansen; Mattias P. Heinrich; Smriti Joshi; Victoriya Kashtanova; Hyeon Gyu Kim; Satoshi Kondo; Christian N. Kruse; Susana K. Lai-Yuen; Hao Li; Han Liu; Buntheng Ly; Ipek Oguz; Hyungseob Shin; Boris Shirokikh; Zixian Su; Guotai Wang; Jianghao Wu; Yanwu Xu; Kai Yao; Li Zhang; Sebastien Ourselin, |
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CrossMoDA 2021 challenge: Benchmark of Cross-Modality Domain Adaptation techniques for Vestibular Schwannoma and Cochlea Segmentation |
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Year |
2023 |
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Medical Image Analysis |
Abbreviated Journal |
MIA |
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83 |
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102628 |
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Domain Adaptation; Segmen tation; Vestibular Schwnannoma |
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Domain Adaptation (DA) has recently raised strong interests in the medical imaging community. While a large variety of DA techniques has been proposed for image segmentation, most of these techniques have been validated either on private datasets or on small publicly available datasets. Moreover, these datasets mostly addressed single-class problems. To tackle these limitations, the Cross-Modality Domain Adaptation (crossMoDA) challenge was organised in conjunction with the 24th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2021). CrossMoDA is the first large and multi-class benchmark for unsupervised cross-modality DA. The challenge's goal is to segment two key brain structures involved in the follow-up and treatment planning of vestibular schwannoma (VS): the VS and the cochleas. Currently, the diagnosis and surveillance in patients with VS are performed using contrast-enhanced T1 (ceT1) MRI. However, there is growing interest in using non-contrast sequences such as high-resolution T2 (hrT2) MRI. Therefore, we created an unsupervised cross-modality segmentation benchmark. The training set provides annotated ceT1 (N=105) and unpaired non-annotated hrT2 (N=105). The aim was to automatically perform unilateral VS and bilateral cochlea segmentation on hrT2 as provided in the testing set (N=137). A total of 16 teams submitted their algorithm for the evaluation phase. The level of performance reached by the top-performing teams is strikingly high (best median Dice – VS:88.4%; Cochleas:85.7%) and close to full supervision (median Dice – VS:92.5%; Cochleas:87.7%). All top-performing methods made use of an image-to-image translation approach to transform the source-domain images into pseudo-target-domain images. A segmentation network was then trained using these generated images and the manual annotations provided for the source image. |
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HUPBA |
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Admin @ si @ DKI2023 |
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3706 |
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Lei Li; Fuping Wu; Sihan Wang; Xinzhe Luo; Carlos Martin Isla; Shuwei Zhai; Jianpeng Zhang; Yanfei Liu; Zhen Zhang; Markus J. Ankenbrand; Haochuan Jiang; Xiaoran Zhang; Linhong Wang; Tewodros Weldebirhan Arega; Elif Altunok; Zhou Zhao; Feiyan Li; Jun Ma; Xiaoping Yang; Elodie Puybareau; Ilkay Oksuz; Stephanie Bricq; Weisheng Li;Kumaradevan Punithakumar; Sotirios A. Tsaftaris; Laura M. Schreiber; Mingjing Yang; Guocai Liu; Yong Xia; Guotai Wang; Sergio Escalera; Xiahai Zhuag |
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Title |
MyoPS: A benchmark of myocardial pathology segmentation combining three-sequence cardiac magnetic resonance images |
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Journal Article |
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Year |
2023 |
Publication |
Medical Image Analysis |
Abbreviated Journal |
MIA |
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87 |
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102808 |
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Assessment of myocardial viability is essential in diagnosis and treatment management of patients suffering from myocardial infarction, and classification of pathology on the myocardium is the key to this assessment. This work defines a new task of medical image analysis, i.e., to perform myocardial pathology segmentation (MyoPS) combining three-sequence cardiac magnetic resonance (CMR) images, which was first proposed in the MyoPS challenge, in conjunction with MICCAI 2020. Note that MyoPS refers to both myocardial pathology segmentation and the challenge in this paper. The challenge provided 45 paired and pre-aligned CMR images, allowing algorithms to combine the complementary information from the three CMR sequences for pathology segmentation. In this article, we provide details of the challenge, survey the works from fifteen participants and interpret their methods according to five aspects, i.e., preprocessing, data augmentation, learning strategy, model architecture and post-processing. In addition, we analyze the results with respect to different factors, in order to examine the key obstacles and explore the potential of solutions, as well as to provide a benchmark for future research. The average Dice scores of submitted algorithms were and for myocardial scars and edema, respectively. We conclude that while promising results have been reported, the research is still in the early stage, and more in-depth exploration is needed before a successful application to the clinics. MyoPS data and evaluation tool continue to be publicly available upon registration via its homepage (www.sdspeople.fudan.edu.cn/zhuangxiahai/0/myops20/). |
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HUPBA |
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Admin @ si @ LWW2023a |
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3878 |
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Sergio Escalera |
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Title |
Multi-Modal Human Behaviour Analysis from Visual Data Sources |
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2013 |
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ERCIM News journal |
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ERCIM |
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95 |
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21-22 |
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The Human Pose Recovery and Behaviour Analysis group (HuPBA), University of Barcelona, is developing a line of research on multi-modal analysis of humans in visual data. The novel technology is being applied in several scenarios with high social impact, including sign language recognition, assisted technology and supported diagnosis for the elderly and people with mental/physical disabilities, fitness conditioning, and Human Computer Interaction. |
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0926-4981 |
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HuPBA;MILAB |
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Admin @ si @ Esc2013 |
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2361 |
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Maria Salamo; Sergio Escalera |
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Title |
Increasing Retrieval Quality in Conversational Recommenders |
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2011 |
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IEEE Transactions on Knowledge and Data Engineering |
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TKDE |
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99 |
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1-1 |
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IF JCR CCIA 2.286 2009 24/103
JCR Impact Factor 2010: 1.851
A major task of research in conversational recommender systems is personalization. Critiquing is a common and powerful form of feedback, where a user can express her feature preferences by applying a series of directional critiques over the recommendations instead of providing specific preference values. Incremental Critiquing is a conversational recommender system that uses critiquing as a feedback to efficiently personalize products. The expectation is that in each cycle the system retrieves the products that best satisfy the user’s soft product preferences from a minimal information input. In this paper, we present a novel technique that increases retrieval quality based on a combination of compatibility and similarity scores. Under the hypothesis that a user learns Turing the recommendation process, we propose two novel exponential reinforcement learning approaches for compatibility that take into account both the instant at which the user makes a critique and the number of satisfied critiques. Moreover, we consider that the impact of features on the similarity differs according to the preferences manifested by the user. We propose a global weighting approach that uses a common weight for nearest cases in order to focus on groups of relevant products. We show that our methodology significantly improves recommendation efficiency in four data sets of different sizes in terms of session length in comparison with state-of-the-art approaches. Moreover, our recommender shows higher robustness against noisy user data when compared to classical approaches |
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IEEE |
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1041-4347 |
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MILAB; HuPBA |
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Admin @ si @ SaE2011 |
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1713 |
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Meysam Madadi; Hugo Bertiche; Sergio Escalera |
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SMPLR: Deep learning based SMPL reverse for 3D human pose and shape recovery |
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2020 |
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Pattern Recognition |
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PR |
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106 |
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107472 |
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Deep learning; 3D Human pose; Body shape; SMPL; Denoising autoencoder; Volumetric stack hourglass |
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In this paper we propose to embed SMPL within a deep-based model to accurately estimate 3D pose and shape from a still RGB image. We use CNN-based 3D joint predictions as an intermediate representation to regress SMPL pose and shape parameters. Later, 3D joints are reconstructed again in the SMPL output. This module can be seen as an autoencoder where the encoder is a deep neural network and the decoder is SMPL model. We refer to this as SMPL reverse (SMPLR). By implementing SMPLR as an encoder-decoder we avoid the need of complex constraints on pose and shape. Furthermore, given that in-the-wild datasets usually lack accurate 3D annotations, it is desirable to lift 2D joints to 3D without pairing 3D annotations with RGB images. Therefore, we also propose a denoising autoencoder (DAE) module between CNN and SMPLR, able to lift 2D joints to 3D and partially recover from structured error. We evaluate our method on SURREAL and Human3.6M datasets, showing improvement over SMPL-based state-of-the-art alternatives by about 4 and 12 mm, respectively. |
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HuPBA; no proj |
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Admin @ si @ MBE2020 |
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3439 |
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