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Giuseppe Pezzano, Oliver Diaz, Vicent Ribas Ripoll, & Petia Radeva. (2021). CoLe-CNN+: Context learning – Convolutional neural network for COVID-19-Ground-Glass-Opacities detection and segmentation. CBM - Computers in Biology and Medicine, 136, 104689.
Abstract: The most common tool for population-wide COVID-19 identification is the Reverse Transcription-Polymerase Chain Reaction test that detects the presence of the virus in the throat (or sputum) in swab samples. This test has a sensitivity between 59% and 71%. However, this test does not provide precise information regarding the extension of the pulmonary infection. Moreover, it has been proven that through the reading of a computed tomography (CT) scan, a clinician can provide a more complete perspective of the severity of the disease. Therefore, we propose a comprehensive system for fully-automated COVID-19 detection and lesion segmentation from CT scans, powered by deep learning strategies to support decision-making process for the diagnosis of COVID-19.
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Simone Balocco, Francesco Ciompi, Juan Rigla, Xavier Carrillo, Josefina Mauri, & Petia Radeva. (2019). Assessment of intracoronary stent location and extension in intravascular ultrasound sequences. MEDPHYS - Medical Physics, 46(2), 484–493.
Abstract: PURPOSE:
An intraluminal coronary stent is a metal scaffold deployed in a stenotic artery during percutaneous coronary intervention (PCI). In order to have an effective deployment, a stent should be optimally placed with regard to anatomical structures such as bifurcations and stenoses. Intravascular ultrasound (IVUS) is a catheter-based imaging technique generally used for PCI guiding and assessing the correct placement of the stent. A novel approach that automatically detects the boundaries and the position of the stent along the IVUS pullback is presented. Such a technique aims at optimizing the stent deployment.
METHODS:
The method requires the identification of the stable frames of the sequence and the reliable detection of stent struts. Using these data, a measure of likelihood for a frame to contain a stent is computed. Then, a robust binary representation of the presence of the stent in the pullback is obtained applying an iterative and multiscale quantization of the signal to symbols using the Symbolic Aggregate approXimation algorithm.
RESULTS:
The technique was extensively validated on a set of 103 IVUS of sequences of in vivo coronary arteries containing metallic and bioabsorbable stents acquired through an international multicentric collaboration across five clinical centers. The method was able to detect the stent position with an overall F-measure of 86.4%, a Jaccard index score of 75% and a mean distance of 2.5 mm from manually annotated stent boundaries, and in bioabsorbable stents with an overall F-measure of 88.6%, a Jaccard score of 77.7 and a mean distance of 1.5 mm from manually annotated stent boundaries. Additionally, a map indicating the distance between the lumen and the stent along the pullback is created in order to show the angular sectors of the sequence in which the malapposition is present.
CONCLUSIONS:
Results obtained comparing the automatic results vs the manual annotation of two observers shows that the method approaches the interobserver variability. Similar performances are obtained on both metallic and bioabsorbable stents, showing the flexibility and robustness of the method.
Keywords: IVUS; malapposition; stent; ultrasound
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Eduardo Aguilar, Beatriz Remeseiro, Marc Bolaños, & Petia Radeva. (2018). Grab, Pay, and Eat: Semantic Food Detection for Smart Restaurants. IEEE Transactions on Multimedia, 20(12), 3266–3275.
Abstract: The increase in awareness of people towards their nutritional habits has drawn considerable attention to the field of automatic food analysis. Focusing on self-service restaurants environment, automatic food analysis is not only useful for extracting nutritional information from foods selected by customers, it is also of high interest to speed up the service solving the bottleneck produced at the cashiers in times of high demand. In this paper, we address the problem of automatic food tray analysis in canteens and restaurants environment, which consists in predicting multiple foods placed on a tray image. We propose a new approach for food analysis based on convolutional neural networks, we name Semantic Food Detection, which integrates in the same framework food localization, recognition and segmentation. We demonstrate that our method improves the state of the art food detection by a considerable margin on the public dataset UNIMIB2016 achieving about 90% in terms of F-measure, and thus provides a significant technological advance towards the automatic billing in restaurant environments.
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Md.Mostafa Kamal Sarker, Hatem A. Rashwan, Farhan Akram, Estefania Talavera, Syeda Furruka Banu, Petia Radeva, et al. (2019). Recognizing Food Places in Egocentric Photo-Streams Using Multi-Scale Atrous Convolutional Networks and Self-Attention Mechanism. ACCESS - IEEE Access, 7, 39069–39082.
Abstract: Wearable sensors (e.g., lifelogging cameras) represent very useful tools to monitor people's daily habits and lifestyle. Wearable cameras are able to continuously capture different moments of the day of their wearers, their environment, and interactions with objects, people, and places reflecting their personal lifestyle. The food places where people eat, drink, and buy food, such as restaurants, bars, and supermarkets, can directly affect their daily dietary intake and behavior. Consequently, developing an automated monitoring system based on analyzing a person's food habits from daily recorded egocentric photo-streams of the food places can provide valuable means for people to improve their eating habits. This can be done by generating a detailed report of the time spent in specific food places by classifying the captured food place images to different groups. In this paper, we propose a self-attention mechanism with multi-scale atrous convolutional networks to generate discriminative features from image streams to recognize a predetermined set of food place categories. We apply our model on an egocentric food place dataset called “EgoFoodPlaces” that comprises of 43 392 images captured by 16 individuals using a lifelogging camera. The proposed model achieved an overall classification accuracy of 80% on the “EgoFoodPlaces” dataset, respectively, outperforming the baseline methods, such as VGG16, ResNet50, and InceptionV3.
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Stefan Lonn, Petia Radeva, & Mariella Dimiccoli. (2019). Smartphone picture organization: A hierarchical approach. CVIU - Computer Vision and Image Understanding, 187, 102789.
Abstract: We live in a society where the large majority of the population has a camera-equipped smartphone. In addition, hard drives and cloud storage are getting cheaper and cheaper, leading to a tremendous growth in stored personal photos. Unlike photo collections captured by a digital camera, which typically are pre-processed by the user who organizes them into event-related folders, smartphone pictures are automatically stored in the cloud. As a consequence, photo collections captured by a smartphone are highly unstructured and because smartphones are ubiquitous, they present a larger variability compared to pictures captured by a digital camera. To solve the need of organizing large smartphone photo collections automatically, we propose here a new methodology for hierarchical photo organization into topics and topic-related categories. Our approach successfully estimates latent topics in the pictures by applying probabilistic Latent Semantic Analysis, and automatically assigns a name to each topic by relying on a lexical database. Topic-related categories are then estimated by using a set of topic-specific Convolutional Neuronal Networks. To validate our approach, we ensemble and make public a large dataset of more than 8,000 smartphone pictures from 40 persons. Experimental results demonstrate major user satisfaction with respect to state of the art solutions in terms of organization.
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