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Laura Igual; Joan Carles Soliva; Antonio Hernandez; Sergio Escalera; Xavier Jimenez ; Oscar Vilarroya; Petia Radeva |
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Title |
A fully-automatic caudate nucleus segmentation of brain MRI: Application in volumetric analysis of pediatric attention-deficit/hyperactivity disorder |
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Journal Article |
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Year |
2011 |
Publication |
BioMedical Engineering Online |
Abbreviated Journal |
BEO |
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10 |
Issue  |
105 |
Pages |
1-23 |
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Keywords |
Brain caudate nucleus; segmentation; MRI; atlas-based strategy; Graph Cut framework |
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Abstract |
Background
Accurate automatic segmentation of the caudate nucleus in magnetic resonance images (MRI) of the brain is of great interest in the analysis of developmental disorders. Segmentation methods based on a single atlas or on multiple atlases have been shown to suitably localize caudate structure. However, the atlas prior information may not represent the structure of interest correctly. It may therefore be useful to introduce a more flexible technique for accurate segmentations.
Method
We present Cau-dateCut: a new fully-automatic method of segmenting the caudate nucleus in MRI. CaudateCut combines an atlas-based segmentation strategy with the Graph Cut energy-minimization framework. We adapt the Graph Cut model to make it suitable for segmenting small, low-contrast structures, such as the caudate nucleus, by defining new energy function data and boundary potentials. In particular, we exploit information concerning the intensity and geometry, and we add supervised energies based on contextual brain structures. Furthermore, we reinforce boundary detection using a new multi-scale edgeness measure.
Results
We apply the novel CaudateCut method to the segmentation of the caudate nucleus to a new set of 39 pediatric attention-deficit/hyperactivity disorder (ADHD) patients and 40 control children, as well as to a public database of 18 subjects. We evaluate the quality of the segmentation using several volumetric and voxel by voxel measures. Our results show improved performance in terms of segmentation compared to state-of-the-art approaches, obtaining a mean overlap of 80.75%. Moreover, we present a quantitative volumetric analysis of caudate abnormalities in pediatric ADHD, the results of which show strong correlation with expert manual analysis.
Conclusion
CaudateCut generates segmentation results that are comparable to gold-standard segmentations and which are reliable in the analysis of differentiating neuroanatomical abnormalities between healthy controls and pediatric ADHD. |
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1475-925X |
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MILAB;HuPBA |
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no |
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Admin @ si @ ISH2011 |
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1882 |
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Author |
P. Canals; Simone Balocco; O. Diaz; J. Li; A. Garcia Tornel; M. Olive Gadea; M. Ribo |
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Title |
A fully automatic method for vascular tortuosity feature extraction in the supra-aortic region: unraveling possibilities in stroke treatment planning |
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Journal Article |
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Year |
2023 |
Publication |
Computerized Medical Imaging and Graphics |
Abbreviated Journal |
CMIG |
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Volume |
104 |
Issue |
102170 |
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Keywords |
Artificial intelligence; Deep learning; Stroke; Thrombectomy; Vascular feature extraction; Vascular tortuosity |
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Abstract |
Vascular tortuosity of supra-aortic vessels is widely considered one of the main reasons for failure and delays in endovascular treatment of large vessel occlusion in patients with acute ischemic stroke. Characterization of tortuosity is a challenging task due to the lack of objective, robust and effective analysis tools. We present a fully automatic method for arterial segmentation, vessel labelling and tortuosity feature extraction applied to the supra-aortic region. A sample of 566 computed tomography angiography scans from acute ischemic stroke patients (aged 74.8 ± 12.9, 51.0% females) were used for training, validation and testing of a segmentation module based on a U-Net architecture (162 cases) and a vessel labelling module powered by a graph U-Net (566 cases). Successively, 30 cases were processed for testing of a tortuosity feature extraction module. Measurements obtained through automatic processing were compared to manual annotations from two observers for a thorough validation of the method. The proposed feature extraction method presented similar performance to the inter-rater variability observed in the measurement of 33 geometrical and morphological features of the arterial anatomy in the supra-aortic region. This system will contribute to the development of more complex models to advance the treatment of stroke by adding immediate automation, objectivity, repeatability and robustness to the vascular tortuosity characterization of patients. |
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Admin @ si @ CBD2023 |
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4005 |
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Author |
Carlo Gatta; Eloi Puertas; Oriol Pujol |
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Title |
Multi-Scale Stacked Sequential Learning |
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Journal Article |
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Year |
2011 |
Publication |
Pattern Recognition |
Abbreviated Journal |
PR |
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44 |
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10-11 |
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2414-2416 |
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Keywords |
Stacked sequential learning; Multiscale; Multiresolution; Contextual classification |
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Abstract |
One of the most widely used assumptions in supervised learning is that data is independent and identically distributed. This assumption does not hold true in many real cases. Sequential learning is the discipline of machine learning that deals with dependent data such that neighboring examples exhibit some kind of relationship. In the literature, there are different approaches that try to capture and exploit this correlation, by means of different methodologies. In this paper we focus on meta-learning strategies and, in particular, the stacked sequential learning approach. The main contribution of this work is two-fold: first, we generalize the stacked sequential learning. This generalization reflects the key role of neighboring interactions modeling. Second, we propose an effective and efficient way of capturing and exploiting sequential correlations that takes into account long-range interactions by means of a multi-scale pyramidal decomposition of the predicted labels. Additionally, this new method subsumes the standard stacked sequential learning approach. We tested the proposed method on two different classification tasks: text lines classification in a FAQ data set and image classification. Results on these tasks clearly show that our approach outperforms the standard stacked sequential learning. Moreover, we show that the proposed method allows to control the trade-off between the detail and the desired range of the interactions. |
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Elsevier |
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MILAB;HuPBA |
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Admin @ si @ GPP2011 |
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1802 |
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Author |
E. Provenzi; Carlo Gatta; M. Fierro; A. Rizzi |
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Title |
A Spatially Variant White-Patch and Gray-World Method for Color Image Enhancement Driven by Local Constant |
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2008 |
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IEEE Transactions on Pattern Analysis and Machine Intelligence |
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TPAMI |
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30 |
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10 |
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1757–1770 |
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BCNPCL @ bcnpcl @ PGF2008 |
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1001 |
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Xavier Carrillo; E Fernandez-Nofrerias; Francesco Ciompi; Oriol Rodriguez-Leor; Petia Radeva; Neus Salvatella; Oriol Pujol; J. Mauri; A. Bayes |
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Title |
Changes in Radial Artery Volume Assessed Using Intravascular Ultrasound: A Comparison of Two Vasodilator Regimens in Transradial Coronary Intervention |
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Journal Article |
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Year |
2011 |
Publication |
Journal of Invasive Cardiology |
Abbreviated Journal |
JOIC |
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Volume |
23 |
Issue |
10 |
Pages |
401-404 |
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Keywords |
radial; vasodilator treatment; percutaneous coronary intervention; IVUS; volumetric IVUS analysis |
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Abstract |
OBJECTIVES:
This study used intravascular ultrasound (IVUS) to evaluate radial artery volume changes after intraarterial administration of nitroglycerin and/or verapamil.
BACKGROUND:
Radial artery spasm, which is associated with radial artery size, is the main limitation of the transradial approach in percutaneous coronary interventions (PCI).
METHODS:
This prospective, randomized study compared the effect of two intra-arterial vasodilator regimens on radial artery volume: 0.2 mg of nitroglycerin plus 2.5 mg of verapamil (Group 1; n = 15) versus 2.5 mg of verapamil alone (Group 2; n = 15). Radial artery lumen volume was assessed using IVUS at two time points: at baseline (5 minutes after sheath insertion) and post-vasodilator (1 minute after drug administration). The luminal volume of the radial artery was computed using ECOC Random Fields (ECOC-RF), a technique used for automatic segmentation of luminal borders in longitudinal cut images from IVUS sequences.
RESULTS:
There was a significant increase in arterial lumen volume in both groups, with an increase from 451 ± 177 mm³ to 508 ± 192 mm³ (p = 0.001) in Group 1 and from 456 ± 188 mm³ to 509 ± 170 mm³ (p = 0.001) in Group 2. There were no significant differences between the groups in terms of absolute volume increase (58 mm³ versus 53 mm³, respectively; p = 0.65) or in relative volume increase (14% versus 20%, respectively; p = 0.69).
CONCLUSIONS:
Administration of nitroglycerin plus verapamil or verapamil alone to the radial artery resulted in similar increases in arterial lumen volume according to ECOC-RF IVUS measurements. |
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MILAB;HuPBA |
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Admin @ si @ CFC2011 |
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1797 |
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