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Patrick Brandao; O. Zisimopoulos; E. Mazomenos; G. Ciutib; Jorge Bernal; M. Visentini-Scarzanell; A. Menciassi; P. Dario; A. Koulaouzidis; A. Arezzo; D.J. Hawkes; D. Stoyanov |
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Towards a computed-aided diagnosis system in colonoscopy: Automatic polyp segmentation using convolution neural networks |
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2018 |
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Journal of Medical Robotics Research |
Abbreviated Journal |
JMRR |
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3 |
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2 |
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convolutional neural networks; colonoscopy; computer aided diagnosis |
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Abstract |
Early diagnosis is essential for the successful treatment of bowel cancers including colorectal cancer (CRC) and capsule endoscopic imaging with robotic actuation can be a valuable diagnostic tool when combined with automated image analysis. We present a deep learning rooted detection and segmentation framework for recognizing lesions in colonoscopy and capsule endoscopy images. We restructure established convolution architectures, such as VGG and ResNets, by converting them into fully-connected convolution networks (FCNs), ne-tune them and study their capabilities for polyp segmentation and detection. We additionally use Shape-from-Shading (SfS) to recover depth and provide a richer representation of the tissue's structure in colonoscopy images. Depth is
incorporated into our network models as an additional input channel to the RGB information and we demonstrate that the resulting network yields improved performance. Our networks are tested on publicly available datasets and the most accurate segmentation model achieved a mean segmentation IU of 47.78% and 56.95% on the ETIS-Larib and CVC-Colon datasets, respectively. For polyp
detection, the top performing models we propose surpass the current state of the art with detection recalls superior to 90% for all datasets tested. To our knowledge, we present the rst work to use FCNs for polyp segmentation in addition to proposing a novel combination of SfS and RGB that boosts performance. |
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MV; no menciona |
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no |
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BZM2018 |
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2976 |
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Jorge Bernal; Aymeric Histace; Marc Masana; Quentin Angermann; Cristina Sanchez Montes; Cristina Rodriguez de Miguel; Maroua Hammami; Ana Garcia Rodriguez; Henry Cordova; Olivier Romain; Gloria Fernandez Esparrach; Xavier Dray; F. Javier Sanchez |
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GTCreator: a flexible annotation tool for image-based datasets |
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2019 |
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International Journal of Computer Assisted Radiology and Surgery |
Abbreviated Journal |
IJCAR |
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14 |
Issue |
2 |
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191–201 |
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Annotation tool; Validation Framework; Benchmark; Colonoscopy; Evaluation |
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Abstract Purpose: Methodology evaluation for decision support systems for health is a time consuming-task. To assess performance of polyp detection
methods in colonoscopy videos, clinicians have to deal with the annotation
of thousands of images. Current existing tools could be improved in terms of
exibility and ease of use. Methods:We introduce GTCreator, a exible annotation tool for providing image and text annotations to image-based datasets.
It keeps the main basic functionalities of other similar tools while extending
other capabilities such as allowing multiple annotators to work simultaneously
on the same task or enhanced dataset browsing and easy annotation transfer aiming to speed up annotation processes in large datasets. Results: The
comparison with other similar tools shows that GTCreator allows to obtain
fast and precise annotation of image datasets, being the only one which offers
full annotation editing and browsing capabilites. Conclusions: Our proposed
annotation tool has been proven to be efficient for large image dataset annota-
tion, as well as showing potential of use in other stages of method evaluation
such as experimental setup or results analysis. |
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MV; 600.096; 600.109; 600.119; 601.305 |
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Admin @ si @ BHM2019 |
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3163 |
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M. Bressan; Jordi Vitria |
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Nonparametric Discriminant Analysis and Nearest Neighbor Classification |
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2003 |
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Pattern Recognition Letters |
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PRL |
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24 |
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15 |
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2743–2749 |
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Abstract |
IF: 0.809 |
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OR;MV |
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BCNPCL @ bcnpcl @ BrV2003b |
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367 |
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Author |
Jordi Vitria; J. Llacer |
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Reconstructing 3D light microscopic images using the EM algorithm |
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1996 |
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Pattern Recognition Letters |
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17 |
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14 |
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1491–1498 |
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OR;MV |
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BCNPCL @ bcnpcl @ ViL1996 |
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74 |
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Author |
David Guillamet; Jordi Vitria; B. Shiele |
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Introducing a weighted non-negative matrix factorization for image classification |
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2003 |
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Pattern Recognition Letters |
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PRL |
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24 |
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14 |
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2447–2454 |
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IF: 0.809 |
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OR;MV |
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BCNPCL @ bcnpcl @ GVS2003 |
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382 |
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