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Lei Li, Fuping Wu, Sihan Wang, Xinzhe Luo, Carlos Martin Isla, Shuwei Zhai, et al. (2023). MyoPS: A benchmark of myocardial pathology segmentation combining three-sequence cardiac magnetic resonance images. MIA - Medical Image Analysis, 87, 102808.
Abstract: Assessment of myocardial viability is essential in diagnosis and treatment management of patients suffering from myocardial infarction, and classification of pathology on the myocardium is the key to this assessment. This work defines a new task of medical image analysis, i.e., to perform myocardial pathology segmentation (MyoPS) combining three-sequence cardiac magnetic resonance (CMR) images, which was first proposed in the MyoPS challenge, in conjunction with MICCAI 2020. Note that MyoPS refers to both myocardial pathology segmentation and the challenge in this paper. The challenge provided 45 paired and pre-aligned CMR images, allowing algorithms to combine the complementary information from the three CMR sequences for pathology segmentation. In this article, we provide details of the challenge, survey the works from fifteen participants and interpret their methods according to five aspects, i.e., preprocessing, data augmentation, learning strategy, model architecture and post-processing. In addition, we analyze the results with respect to different factors, in order to examine the key obstacles and explore the potential of solutions, as well as to provide a benchmark for future research. The average Dice scores of submitted algorithms were and for myocardial scars and edema, respectively. We conclude that while promising results have been reported, the research is still in the early stage, and more in-depth exploration is needed before a successful application to the clinics. MyoPS data and evaluation tool continue to be publicly available upon registration via its homepage (www.sdspeople.fudan.edu.cn/zhuangxiahai/0/myops20/).
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Wenlong Deng, Yongli Mou, Takahiro Kashiwa, Sergio Escalera, Kohei Nagai, Kotaro Nakayama, et al. (2020). Vision based Pixel-level Bridge Structural Damage Detection Using a Link ASPP Network. AC - Automation in Construction, 110, 102973.
Abstract: Structural Health Monitoring (SHM) has greatly benefited from computer vision. Recently, deep learning approaches are widely used to accurately estimate the state of deterioration of infrastructure. In this work, we focus on the problem of bridge surface structural damage detection, such as delamination and rebar exposure. It is well known that the quality of a deep learning model is highly dependent on the quality of the training dataset. Bridge damage detection, our application domain, has the following main challenges: (i) labeling the damages requires knowledgeable civil engineering professionals, which makes it difficult to collect a large annotated dataset; (ii) the damage area could be very small, whereas the background area is large, which creates an unbalanced training environment; (iii) due to the difficulty to exactly determine the extension of the damage, there is often a variation among different labelers who perform pixel-wise labeling. In this paper, we propose a novel model for bridge structural damage detection to address the first two challenges. This paper follows the idea of an atrous spatial pyramid pooling (ASPP) module that is designed as a novel network for bridge damage detection. Further, we introduce the weight balanced Intersection over Union (IoU) loss function to achieve accurate segmentation on a highly unbalanced small dataset. The experimental results show that (i) the IoU loss function improves the overall performance of damage detection, as compared to cross entropy loss or focal loss, and (ii) the proposed model has a better ability to detect a minority class than other light segmentation networks.
Keywords: Semantic image segmentation; Deep learning
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Juanjo Rubio, Takahiro Kashiwa, Teera Laiteerapong, Wenlong Deng, Kohei Nagai, Sergio Escalera, et al. (2019). Multi-class structural damage segmentation using fully convolutional networks. COMPUTIND - Computers in Industry, 112, 103121.
Abstract: Structural Health Monitoring (SHM) has benefited from computer vision and more recently, Deep Learning approaches, to accurately estimate the state of deterioration of infrastructure. In our work, we test Fully Convolutional Networks (FCNs) with a dataset of deck areas of bridges for damage segmentation. We create a dataset for delamination and rebar exposure that has been collected from inspection records of bridges in Niigata Prefecture, Japan. The dataset consists of 734 images with three labels per image, which makes it the largest dataset of images of bridge deck damage. This data allows us to estimate the performance of our method based on regions of agreement, which emulates the uncertainty of in-field inspections. We demonstrate the practicality of FCNs to perform automated semantic segmentation of surface damages. Our model achieves a mean accuracy of 89.7% for delamination and 78.4% for rebar exposure, and a weighted F1 score of 81.9%.
Keywords: Bridge damage detection; Deep learning; Semantic segmentation
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Joakim Bruslund Haurum, Meysam Madadi, Sergio Escalera, & Thomas B. Moeslund. (2022). Multi-scale hybrid vision transformer and Sinkhorn tokenizer for sewer defect classification. AC - Automation in Construction, 144, 104614.
Abstract: A crucial part of image classification consists of capturing non-local spatial semantics of image content. This paper describes the multi-scale hybrid vision transformer (MSHViT), an extension of the classical convolutional neural network (CNN) backbone, for multi-label sewer defect classification. To better model spatial semantics in the images, features are aggregated at different scales non-locally through the use of a lightweight vision transformer, and a smaller set of tokens was produced through a novel Sinkhorn clustering-based tokenizer using distinct cluster centers. The proposed MSHViT and Sinkhorn tokenizer were evaluated on the Sewer-ML multi-label sewer defect classification dataset, showing consistent performance improvements of up to 2.53 percentage points.
Keywords: Sewer Defect Classification; Vision Transformers; Sinkhorn-Knopp; Convolutional Neural Networks; Closed-Circuit Television; Sewer Inspection
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Meysam Madadi, Hugo Bertiche, & Sergio Escalera. (2020). SMPLR: Deep learning based SMPL reverse for 3D human pose and shape recovery. PR - Pattern Recognition, 106, 107472.
Abstract: In this paper we propose to embed SMPL within a deep-based model to accurately estimate 3D pose and shape from a still RGB image. We use CNN-based 3D joint predictions as an intermediate representation to regress SMPL pose and shape parameters. Later, 3D joints are reconstructed again in the SMPL output. This module can be seen as an autoencoder where the encoder is a deep neural network and the decoder is SMPL model. We refer to this as SMPL reverse (SMPLR). By implementing SMPLR as an encoder-decoder we avoid the need of complex constraints on pose and shape. Furthermore, given that in-the-wild datasets usually lack accurate 3D annotations, it is desirable to lift 2D joints to 3D without pairing 3D annotations with RGB images. Therefore, we also propose a denoising autoencoder (DAE) module between CNN and SMPLR, able to lift 2D joints to 3D and partially recover from structured error. We evaluate our method on SURREAL and Human3.6M datasets, showing improvement over SMPL-based state-of-the-art alternatives by about 4 and 12 mm, respectively.
Keywords: Deep learning; 3D Human pose; Body shape; SMPL; Denoising autoencoder; Volumetric stack hourglass
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